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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgattagataaatgcatgtttatactttggtcatgactcagtcttttgaatctggaacgttttcttattgccatcatgatctataacagGATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGAGATTCGTTAAGGCGGATACTTCTAGCTTATGCTTGTCACAACCCATCTG

Basic information

species Arabidopsis thaliana
transcript AT2G37290.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37290.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv08s0040g03050.t01 (Vitis vinifera), 3'ss of exon 4
-----------------gttttgattagataaatgcatgtttatactttg-----gtcatgactcagtcttt----tgaatctggaacgttttcttattgcca----tcatgatctataa-cagGATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGAGATTCGTTAAGGCGGATACTTCTAGCTTATGCTTGTCACAACCCATCTG
                   || || |  ||   |  || ||| |  || |     |  |  |||    | ||    || |       | | | | ||     |    || || ||| ||  |||||| | ||||||||||||||||||||||||||| |  | ||   |||| ||||||| ||||||||  | ||| |||| ||||||   || ||||| ||||
gtcattagatgcatgggccttggactttatcgttcaatctttttgattcgtaggtgctactacttgtaccttgtattgcactctaggcatctccctagcctaacttctcgtgttctctattcagGATTTGCCTCGGACATTCCCAGGCCATCCTGCTCTAGACGAGGTTGGTAGAGATTCCTTAAGGCGTTTGCTTTTAGCGTATGCTCAACATAACCCCTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116398838|gb|EG441430.1|EG441430
EST:     ATGAAAACTCATCTGATGTCCAAAGAAAGTGGAAAAAACAAATTGAAAAG                         GATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGA
genomic: ATGAAAACTCATCTGATGTCCAAAGAAAGTGGAAAAAACAAATTGAAAAGgttttgatta ... tctataacagGATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGA
EST: gi|116401134|gb|EG443726.1|EG443726
EST:     ATGAAAACTCATCTGATGTCCAAAGAAAGTGGAAAAAACAAATTGAAAAG                         GATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGA
genomic: ATGAAAACTCATCTGATGTCCAAAGAAAGTGGAAAAAACAAATTGAAAAGgttttgatta ... tctataacagGATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGA
EST: gi|116398843|gb|EG441435.1|EG441435
EST:     ATGAAAACTCATCTGATGTCCAAAGAAAGTGGAAAAAACAAATTGAAAAG                         GATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGA
genomic: ATGAAAACTCATCTGATGTCCAAAGAAAGTGGAAAAAACAAATTGAAAAGgttttgatta ... tctataacagGATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGA
EST: gi|116398833|gb|EG441425.1|EG441425
EST:     ATGAAAACTCATCTGATGTCCAAAGAAAGTGGAAAAAACAAATTGAAAAG                         GATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGA
genomic: ATGAAAACTCATCTGATGTCCAAAGAAAGTGGAAAAAACAAATTGAAAAGgttttgatta ... tctataacagGATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGA
EST: gi|116398836|gb|EG441428.1|EG441428
EST:     ATGAAAACTCATCTGATGTCCAAAGAAAGTGGAAAAAACAAATTGAAAAG                         GATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGA
genomic: ATGAAAACTCATCTGATGTCCAAAGAAAGTGGAAAAAACAAATTGAAAAGgttttgatta ... tctataacagGATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGA
EST: gi|116401146|gb|EG443738.1|EG443738
EST:     ATGAAAACTCATCTGATGTCCGAAGAAAGTGGAAAAAACAAATTGAAAAG                         GATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGA
genomic: ATGAAAACTCATCTGATGTCCAAAGAAAGTGGAAAAAACAAATTGAAAAGgttttgatta ... tctataacagGATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactcagtcttttgaatctggaacgttttcttattgccatcatgatctataacagGATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGAGATTCGTTAAGGCGGATACTTCTAGCTTATGCTTGTCACAACCCATCTG
                         ttttcttatt  TA-rich tract