Sequence
atgc intronic sequence ATGC exonic sequence...ataactgaaatctggctgagattccttttccgagaacaaaattactttatatgttttttatccacttcaagaataagattaagtttgttgcttttaacagCCGCTGTACTAGTATAGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGGAAATCTGTACGTATATGAAAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G37160.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G37160.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA19G36480.1 (Glycine max), 3'ss of exon 4
ataactgaaatctggctgagat-tccttttccgagaacaaaattactttatatgttttttatccacttcaagaataagattaa-----gtttgttgcttttaacagCCGCTGTACTAGTATAGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGGAAATCTGTACGTATATGAAAAG----
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------gagtattctctgaattgttacattctataaatttaatgtattggaatgccaaagacagtgattggaacctatcttaattgatgtattttcaattcaacagTCGTTGTACTTGTATTGCTTGGGTTCCTGGAGGCGATGGTTCTTTCGTTGTTTCTCATGCTGATGGGAATTTGTACGTATATGAAAAGGCAA
upper sequence: AT2G37160.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA10G05890.1 (Glycine max), 3'ss of exon 5
-----ataactgaaatctggctgagattccttttccgagaacaaaattactttatatgttttttatccacttcaagaataagattaagtttgttgcttttaacagCCGCTGTACTAGTATAGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGGAAATCTGTACGTATATGAAAAG
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taaaaatgtccaaattatgttaaagatctttatgc--attccattattgtgtcaaggacactgcatggaaactagctctgattcatgcttttttgcttttagCAGTCGTTGTACTTGTATTGCTTGGGTGCCTGGAGGTGATGCTGCCTTTGTTGTAGCTCATGCTGATGGGAATTTGTAT------------
upper sequence: AT2G37160.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA03G33740.1 (Glycine max), 3'ss of exon 4
--ataactgaaatctggctgagattccttttccgagaacaaaattactttatatgttttttatccacttcaagaataagattaagtttgttgcttttaacagCCGCTGTACTAGTATAGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGGAAATCTGTACGTATATGAAAAG
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gaattgcttagcttacattctagaactttaatgtattggaatggtatgtca-atggcactgattggaacctatcttaat-tgatgtattttgaattcaacagTCGTTGTACTTGTATTGCATGGGTGCCTGGAGGTGATGGTTCTTTTGTTGTTTCTCACACTGATGGGAATTTGTATGTATACGAAAAG
upper sequence: AT2G37160.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA13G20240.1 (Glycine max), 3'ss of exon 5
ataactgaaatctggctgagattccttttccgagaacaaaattactttat-atgttttttatccacttcaagaataagattaagtttgttgcttttaacagCCGCTGTACTAGTATAGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGGAAATCTGTACGTATATGAAAAG
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aaatttgttgtgtta-taaaaaaatgtccaaaagcatttgattatcgagtcaaggacactatgcaaactagctctgattgatgcttttttgctttgagcagTCATTGTACTTGTATTGCTTGGGTTCCTGGAGGTGATGGTGCCTTTGTTGTAGGTCATGCTGATGGGAATTTGTAT------------ atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatatgttttttatccacttcaagaataagattaagtttgttgcttttaacagCCGCTGTACTAGTATAGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGGAAATCTGTACGTATATGAAAAG
ttgctttt CT-rich tract
aataagattaagttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ataactgaaatctggctgagattccttttccgagaacaaaattactttatatgttttttatccacttcaagaataagattaagtttgttgcttttaacagCCGCTGTACTAGTATAGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGGAAATCTGTACGTATATGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA