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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctgagaaagaacccatatttgctctggaaggccaatatctatagatcaaatatgccttacgagcattttatgaatcgcaacattgcttttatattctctgatcttcagctttttgaatactttgcagGAATTTGTTTCATGTCAAACGATTTG

Basic information

species Arabidopsis thaliana
transcript AT2G37020.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86081369|gb|DR377126.1|DR377126
EST:     TGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATTATCTCACTG                         GAATTTGTTTCATGTCAAACGATTTG
genomic: TGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATTATCTCACTGgtaagtttct ... tactttgcagGAATTTGTTTCATGTCAAACGATTTG
EST: gi|116444079|gb|EG486671.1|EG486671
EST:     TGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATTATCTCACTG                         GAATTTGTTTCATGTCAAACGATTTG
genomic: TGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATTATCTCACTGgtaagtttct ... tactttgcagGAATTTGTTTCATGTCAAACGATTTG
EST: gi|86086716|gb|DR382475.1|DR382475
EST:     TGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATTATCTCNCTG                         GAATTTGTTTCATGTCAAACGATTTG
genomic: TGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATTATCTCACTGgtaagtttct ... tactttgcagGAATTTGTTTCATGTCAAACGATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcgcaacattgcttttatattctctgatcttcagctttttgaatactttgcagGAATTTGTTTCATGTCAAACGATTTG
                       ctctgat  putative branch site (score: 4)
         attgcttttatatt  TA-rich tract