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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttttctgacctagtaaactctcatttactgattccaaacttgtacaaacaacacttatgctatctagaagatctcttttaacttagtaatgagatatcaattgggcgactgatatggttgcgaatttgtgcaatgtagTCCGCACGCTGTTACAGGACTTATAGGTCTTGGCCTATTGACGGTTCAAACAATCTTACCATCTTTGTTCAAG

Basic information

species Arabidopsis thaliana
transcript AT2G36885.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86016138|gb|DR311884.1|DR311884
EST:     ACNGNNNGTGTTATATCCCTTCTTACTTCCGACAAACCCATCTTCGAAAG                         TCCGCACGCTGTTACAGGACTTATAGGTCTTGGCCTATTGACGGTTCAAAC
genomic: ACTGGTGGTGTTATATCCCTTCTTACTTCCGACAAACCCATCTTCGAAAGgtatattttt ... tgcaatgtagTCCGCACGCTGTTACAGGACTTATAGGTCTTGGCCTATTGACGGTTCAAAC
EST: gi|86078685|gb|DR374442.1|DR374442
EST:     ACTGGTGGTGTTATATCCCTTCTTACTTCCGACAAACCCATCTTCGAAAG                         TCCGCACGCTGTTACAGGACTTATAGGTCTTGGCCTATTGACGGTTCAAAC
genomic: ACTGGTGGTGTTATATCCCTTCTTACTTCCGACAAACCCATCTTCGAAAGgtatattttt ... tgcaatgtagTCCGCACGCTGTTACAGGACTTATAGGTCTTGGCCTATTGACGGTTCAAAC
EST: gi|125022349|gb|EL094618.1|EL094618
EST:     ACTGGTGGTGTTATATCCCTTCTTACTTCCGACAAACCCATCTTCGAAAG                         TCCGACACGCTGTTACAGGACTTATAGGTCTTGGCC
genomic: ACTGGTGGTGTTATATCCCTTCTTACTTCCGACAAACCCATCTTCGAAAGgtatattttt ... tgcaatgtagTCCG-CACGCTGTTACAGGACTTATAGGTCTTGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtaatgagatatcaattgggcgactgatatggttgcgaatttgtgcaatgtagTCCGCACGCTGTTACAGGACTTATAGGTCTTGGCCTATTGACGGTTCAAACAATCTTACCATCTTTGTTCAAG
                       gactgat  putative branch site (score: 3)
          atatcaatt  TA-rich tract