1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttggtttcatttaacttcgcaaagtatagaatctttgattgagttatcactgattgatctcttgtaatgtctgattctcacagGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCTAGAGGCATGGCATCTCTG
species | Arabidopsis thaliana |
transcript | AT2G35260.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAG GGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCTEST: gi|164186921|gb|ES022831.1|ES022831
genomic: TCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAGgtttggtttc ... attctcacagGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
EST: GCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAG GGTGCTCTGTCTGATATATTCTTGAAAGGA-CACAGTTGATGACAGATTCTEST: gi|116414696|gb|EG457288.1|EG457288
genomic: GCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAGgtttggtttc ... attctcacagGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
EST: AGAAGAGCTCTTTTACCGTGTTGCTGTACAG GGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCTEST: gi|124927855|gb|EL005551.1|EL005551
genomic: AGAAGAGCTCTTTTACCGTGTTGCTGTACAGgtttggtttc ... attctcacagGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
EST: TTTTACCGTGTTGCTGTACAG GGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCTEST: gi|164016098|gb|EL986720.1|EL986720
genomic: TTTTACCGTGTTGCTGTACAGgtttggtttc ... attctcacagGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
EST: GCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAG GGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCTEST: gi|116414695|gb|EG457287.1|EG457287
genomic: GCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAGgtttggtttc ... attctcacagGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
EST: TCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAG GGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
genomic: TCGCGGCCAGTTCAATAGGAGAAGAGCTCTTTTACCGTGTTGCTGTACAGgtttggtttc ... attctcacagGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCT
gaatctttgattgagttatcactgattgatctcttgtaatgtctgattctcacagGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCTAGAGGCATGGCATCTCTG
ttctcac CT-rich tract
tttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggtttcatttaacttcgcaaagtatagaatctttgattgagttatcactgattgatctcttgtaatgtctgattctcacagGGTGCTCTGTCTGATATATTCTTGAAAGGAACACAGTTGATGACAGATTCTAGAGGCATGGCATCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA