1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agaaagtaccgtaaaatgttaaacttccaatgttccttagtgaaaaaggtaaatatgtatttttcacaaatgttaaacttgtcatttgtgtgtttgacagGACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAAAGTTAAAAAGAAGAAATTTTTTGGTGTAGTGAATTCGAAGAGCAATATG
species | Arabidopsis thaliana |
transcript | AT2G34580.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAG GACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAAEST: gi|116413668|gb|EG456260.1|EG456260
genomic: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAGgtatgattct ... tgtttgacagGACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAA
EST: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAG GACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAAEST: gi|116418833|gb|EG461425.1|EG461425
genomic: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAGgtatgattct ... tgtttgacagGACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAA
EST: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAG GACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAAEST: gi|116418820|gb|EG461412.1|EG461412
genomic: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAGgtatgattct ... tgtttgacagGACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAA
EST: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAG GACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAAEST: gi|116418824|gb|EG461416.1|EG461416
genomic: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAGgtatgattct ... tgtttgacagGACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAA
EST: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAG GACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAAEST: gi|116418831|gb|EG461423.1|EG461423
genomic: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAGgtatgattct ... tgtttgacagGACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAA
EST: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAG GACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAAEST: gi|116418822|gb|EG461414.1|EG461414
genomic: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAGgtatgattct ... tgtttgacagGACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAA
EST: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAG GACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAAEST: gi|116418816|gb|EG461408.1|EG461408
genomic: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAGgtatgattct ... tgtttgacagGACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAA
EST: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAG GACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAAEST: gi|116418811|gb|EG461403.1|EG461403
genomic: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAGgtatgattct ... tgtttgacagGACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAA
EST: GTTCGAGGAAAGTCATCAGAAGAACACTTATCTACAGAACATAAATTAAG GACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCGCGAAACAA
genomic: GTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAAGgtatgattct ... tgtttgacagGACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAA
aaggtaaatatgtatttttcacaaatgttaaacttgtcatttgtgtgtttgacagGACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAAAGTTAAAAAGAAGAAATTTTTTGGTGTAGTGAATTCGAAGAGCAATATG
aaatatgtatttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaagtaccgtaaaatgttaaacttccaatgttccttagtgaaaaaggtaaatatgtatttttcacaaatgttaaacttgtcatttgtgtgtttgacagGACGTGTATATAAGCATAATCTATACCGGAGAAGAAGAAGTCACGAAACAAAGTTAAAAAGAAGAAATTTTTTGGTGTAGTGAATTCGAAGAGCAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
agaaagta
- - - - - - - - - - - -cttccaa
- - - - - - - - - - - - - - - - - - - - -gaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaatg