1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaactcttgatatttgtgtgattatatattttgtagacctgtttgtgtcttcgtatctgatttggatgtatcatgatttgaagAGGAACCTGTGGAGCGTGATGCTGTGCATAAGGCTCTGATGTCATTGTTACGACAAGATCCAAAAG
species | Arabidopsis thaliana |
transcript | AT2G34040.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATATTTTATCTAAGATTGTTGATGTTCTTGTTCAACTCTTGAATACAG AGGAACCTGTGGAGCGTGATGCTGTGCATAAGGCTCTGATGTCEST: gi|86038473|gb|DR334228.1|DR334228
genomic: GATATTTTATCTAAGATTGTTGATGTTCTTGTTCAACTCTTGAATACAGgtaactcttg ... tgatttgaagAGGAACCTGTGGAGCGTGATGCTGTGCATAAGGCTCTGATGTC
EST: AGATATTTTATCTAAGATTGTTGATGTTCTTGTTCAACTCTTGAATACAG AGGAACCTGTGGAGCGTGATGCTGTGCATAAGGCTCTGATGTCATTGTTACEST: gi|124928590|gb|EL006222.1|EL006222
genomic: AGATATTTTATCTAAGATTGTTGATGTTCTTGTTCAACTCTTGAATACAGgtaactcttg ... tgatttgaagAGGAACCTGTGGAGCGTGATGCTGTGCATAAGGCTCTGATGTCATTGTTAC
EST: AGATATTTTATCTAAGATTGTTGATGTTCTTGTTCAACTCTTGAATACAG AGGAACCTGTGGAG
genomic: AGATATTTTATCTAAGATTGTTGATGTTCTTGTTCAACTCTTGAATACAGgtaactcttg ... tgatttgaagAGGAACCTGTGGAG
ttttgtagacctgtttgtgtcttcgtatctgatttggatgtatcatgatttgaagAGGAACCTGTGGAGCGTGATGCTGTGCATAAGGCTCTGATGTCATTGTTACGACAAGATCCAAAAG
atctgat putative branch site (score: 4)
atgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactcttgatatttgtgtgattatatattttgtagacctgtttgtgtcttcgtatctgatttggatgtatcatgatttgaagAGGAACCTGTGGAGCGTGATGCTGTGCATAAGGCTCTGATGTCATTGTTACGACAAGATCCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG