1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacgcgacacgttcagcttcacattagttatgctggagcctgatgataagtttgatcttttactagttgatgaaactgagtgtttgagactgttgaatatttttactttgcagATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTTGATGGATTCTTCGGCACAAAGCGATGTCATCATGAGAATGATGGCAAGAAACTCCA
species | Arabidopsis thaliana |
transcript | AT2G30950.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTACTGGCGCAGTTGGTGACTTACAACAGATCACCGGTTTGGCTAGACAG ATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTTGATGGATEST: gi|125066491|gb|EL133346.1|EL133346
genomic: CTACTGGCGCAGTTGGTGACTTACAACAGATCACCGGTTTGGCTAGACAGgtacgcgaca ... tactttgcagATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTTGATGGAT
EST: TCACCGGTTTGGCTAGACAG ATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTTCGATGGAEST: gi|125104918|gb|EL158850.1|EL158850
genomic: TCACCGGTTTGGCTAGACAGgtacgcgaca ... tactttgcagATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTT-GATGGA
EST: CAACAGATCACCGGTTTGGCTAGACAG ATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTTGATGGATEST: gi|163966545|gb|ES084070.1|ES084070
genomic: CAACAGATCACCGGTTTGGCTAGACAGgtacgcgaca ... tactttgcagATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTTGATGGAT
EST: CTACTGGCGCAGTTGGTGACTTACAACAGATCACCGGTTTGGCTAGACAG ATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTTGATGGEST: gi|124735162|gb|EH826564.1|EH826564
genomic: CTACTGGCGCAGTTGGTGACTTACAACAGATCACCGGTTTGGCTAGACAGgtacgcgaca ... tactttgcagATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTTGATGG
EST: CAGTTGGTGACTTACAACAGATCACCGGTTTGGCTAGACAG ATGGTAACAACATTTGGAATGTCTGATATEST: gi|125281835|gb|EL295920.1|EL295920
genomic: CAGTTGGTGACTTACAACAGATCACCGGTTTGGCTAGACAGgtacgcgaca ... tactttgcagATGGTAACAACATTTGGAATGTCTGATAT
EST: CTACTGGCGCAGTTGGTGACTTACAACAGATCACCGGTTTGGCTAGACAG ATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTTEST: gi|116411694|gb|EG454286.1|EG454286
genomic: CTACTGGCGCAGTTGGTGACTTACAACAGATCACCGGTTTGGCTAGACAGgtacgcgaca ... tactttgcagATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTT
EST: CTACTGGCGCAGTTGGTGACTTACAACAGATCACCGGTTTGGCTAGACAG ATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTTGATGGATEST: gi|124927513|gb|EL005245.1|EL005245
genomic: CTACTGGCGCAGTTGGTGACTTACAACAGATCACCGGTTTGGCTAGACAGgtacgcgaca ... tactttgcagATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTTGATGGAT
EST: TCACCGGTTTGGCTAGACAG ATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTTGATGGATEST: gi|125304546|gb|EL318631.1|EL318631
genomic: TCACCGGTTTGGCTAGACAGgtacgcgaca ... tactttgcagATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTTGATGGAT
EST: GCAGTTGGTGACTTACAACAGATCACCGGTTTGGCTAGACAG ATGGTAACAACATTTGGAATGTEST: gi|125199131|gb|EL214085.1|EL214085
genomic: GCAGTTGGTGACTTACAACAGATCACCGGTTTGGCTAGACAGgtacgcgaca ... tactttgcagATGGTAACAACATTTGGAATGT
EST: CTACTGGCGCAGTTGGTGACTTACAACAGATCACCGGTTTGGCTAGACAG ATGGTAACAACATTTGGAATGTCTGA
genomic: CTACTGGCGCAGTTGGTGACTTACAACAGATCACCGGTTTGGCTAGACAGgtacgcgaca ... tactttgcagATGGTAACAACATTTGGAATGTCTGA
tttactagttgatgaaactgagtgtttgagactgttgaatatttttactttgcagATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTTGATGGATTCTTCGGCACAAAGCGATGTCATCATGAGAATGATGGCAAGAAACTCCA
agttgat putative branch site (score: 5)
tttttacttt putative PPT
ttgaatatttttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcgacacgttcagcttcacattagttatgctggagcctgatgataagtttgatcttttactagttgatgaaactgagtgtttgagactgttgaatatttttactttgcagATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTTGATGGATTCTTCGGCACAAAGCGATGTCATCATGAGAATGATGGCAAGAAACTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA