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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattttgaaattcccaaacctttatagttgatttgagattgttaagagtaaaatatatttgatattgggggattgattttatagTGCTACAGAAGTCCTGGAAAAGAAGGATCACATTTTAACCCATACAGTAGTTTATTTGCTCCAAGCGAGAGAAAGCTTATTGCAACTTCAACTACTTGTT

Basic information

species Arabidopsis thaliana
transcript AT2G29980.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124975438|gb|EL048928.1|EL048928
EST:     CTGTCCCTCTCCCCATGCTCGCATATCCTCTCTATTTG                         TGCTACAGAAGTCCTGGAAAAGAAGGATCACATTTTAACCCATACAGTAGT
genomic: CTGTCCCTCTCCCCATGCTCGCATATCCTCTCTATTTGgtaaattttg ... gattttatagTGCTACAGAAGTCCTGGAAAAGAAGGATCACATTTTAACCCATACAGTAGT
EST: gi|124709023|gb|EH800425.1|EH800425
EST:     TGCTCAGATACACTGTCCCTCTCCCCATGCTCGCATATCCTCTCTATTTG                         TGCTACAGAAGTCCTGGAAAAGAAGGATCACATTTTAACCC
genomic: TGCTCAGATACACTGTCCCTCTCCCCATGCTCGCATATCCTCTCTATTTGgtaaattttg ... gattttatagTGCTACAGAAGTCCTGGAAAAGAAGGATCACATTTTAACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttgagattgttaagagtaaaatatatttgatattgggggattgattttatagTGCTACAGAAGTCCTGGAAAAGAAGGATCACATTTTAACCCATACAGTAGTTTATTTGCTCCAAGCGAGAGAAAGCTTATTGCAACTTCAACTACTTGTT
                                         gattgat  putative branch site (score: 4)
        attgttaagagtaaaa  TA-rich tract