Sequence
atgc intronic sequence ATGC exonic sequencegtatctcaaaactgtttccagattttcaccgccaaagttgtgtagtgacatctcattttgtgtgtttgaaacttggttatttattcagTTGAGGCTAGGGTCACAGTACTTCTTCTATATGGAGCCACAAACAGCACTTGCCTTGCCAGACGAAGACAATTGTGTCAAGGTATTTAGTTCATCTCAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G27150.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G27150.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA14G04950.1 (Glycine max), 3'ss of exon 4
---------------------------------------------------------------------gtatctcaaaactgtttccagattttcaccgccaaa---gttgtgt--agtgacatctcattttgtgtgtttgaaacttggttatttattcagTTGAGGCTAGGGTCACAGTACTTCTTCTATATGGAGCCACAAACAGCACTTGCCTTGCCAGACGAAGACAATTGTGTCAAGGTATTTAGTTCATCTCAAG
| | | || || | | || | | | || ||| || | | |||||| | | | | | | | | | | || ||||||| || ||||| || |||| |||||||||||| ||||||| |||||||| | ||||| ||||||||||| | | || | ||| |||
gtacattgtttactttgcttcccctcttcctctcattccatacctttgtgaaccttggtttctgatacaatgttt-aagtttgctcctgaataattaatgtttaattggttatgctgaacaaatactcattgt-tatctatcatattcaatgttaaatgcagTTGAAACTTGGGTCTCAATACTATTTCTATATGGAGACACAAACTGCACTTGCTGTTCCAGATGAAGACAATTGCATTACAGTTTACTCCTCAAACCAAT
upper sequence: AT2G27150.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv06s0009g00770.t01 (Vitis vinifera), 3'ss of exon 4
------------------gtatctcaaaactgtttccagattt-tcaccgccaaagttgtgtagtgacatctcattttgtgtgtttga-aacttggttatttattcagTTGAGGCTAGGGTCACAGTACTTCTTCTATATGGAGCCACAAACAGCACTTGCCTTGCCAGACGAAGACAATTGTGTCAAGGTATTTAGTTCATCTCAAG
||| || |||| | | | | | | | || | | | | | | || | ||| | ||| | | ||| | | || ||||||||||||| |||||||||||| ||||||| || ||||| | ||||| |||||||| || | ||| | |||||| |||
gtatttgtcatttacttgttatacaaattttgttcctatttctattagtgtttttcttttattttttggttttgtgatgaataattgctgaattgtcctcatgtccagATCAAACTTGGGTCACAGTACTATTTCTATATGGAGACACAAACTGCCCTTGCAATTCCAGATGAAGACAACTGCATTGTGGTTTACAGTTCAATACAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaagttgtgtagtgacatctcattttgtgtgtttgaaacttggttatttattcagTTGAGGCTAGGGTCACAGTACTTCTTCTATATGGAGCCACAAACAGCACTTGCCTTGCCAGACGAAGACAATTGTGTCAAGGTATTTAGTTCATCTCAAG
tttattc CT-rich tract
ttatttattca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatctcaaaactgtttccagattttcaccgccaaagttgtgtagtgacatctcattttgtgtgtttgaaacttggttatttattcagTTGAGGCTAGGGTCACAGTACTTCTTCTATATGGAGCCACAAACAGCACTTGCCTTGCCAGACGAAGACAATTGTGTCAAGGTATTTAGTTCATCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA