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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtttttgtcaatggcttctttttttagttgaatatttgtttgttagttttttcaaatggttttgttttctttcgtgtgttttagGCGGAGACAGATGAATGTAGAACCTGGAGTTGGTAAATGGGTATCGTACCTTAACCGAGAGAGAAAATTGGACTCGATTGTCGGTTCTCGTCCCGCGGTA

Basic information

species Arabidopsis thaliana
transcript AT2G25530.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25530.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G115372_T01 (Zea mays), 3'ss of exon 4
---------------gtgaggtttttgtcaatggcttctttttttagttgaatatttgtttgttagttttttcaaatggttttgttttctttcgtgtgttttagGCGGAGACAGATGAATGTAGAACCTGGAGTTGGTAAATGGGTATCGTACCTTAACCGAGAGAGAAAATTGGACTCGATTGTCGGTTCTCGTCCCGCGGTA
               |   |     | | | | ||||| |     |  || |  | || | | |  ||||||| ||    | |||||| ||   |       ||| | |||      |   ||||||||||||||||||| ||||| |||||||| ||||||||||  ||| | ||  |  | || ||   | | || |  |  
ttacaatacatctgagcatgccaggttttagttgcttcatacgagaaatggac-tatgctgggtttttttttctaac--ctgtgttttgttgattaaaccc-agGAGAAGAAGAGGAAGCATAGAACCTGGAGTTGGTAAGTGGGTCTCGTACCTGAACCGAGAGAAGAAACTAGATACATTGGTAGGCCATAGACCAGTCGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatatttgtttgttagttttttcaaatggttttgttttctttcgtgtgttttagGCGGAGACAGATGAATGTAGAACCTGGAGTTGGTAAATGGGTATCGTACCTTAACCGAGAGAGAAAATTGGACTCGATTGTCGGTTCTCGTCCCGCGGTA
                              ttttgttttctttcgt  CT-rich tract
             ttagttttttcaaat  TA-rich tract