Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtttcttatattttatcaaacattatttgttatcaaggtaatagtttaggatacacttttgttaacaatgaaattacattattaattttaatatgttgacatataattgaatctgcagCTCAGGAAAATTTGATATTTCTAATTAAATGGATGTCGAGATTTCCTCAGTACCAATATAGAGATTTCTACATTGTTGGTGAAAGCTACGCTG

Basic information

species Arabidopsis thaliana
transcript AT2G24010.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G24010.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA17G08090.1 (Glycine max), 3'ss of exon 5
----gtcagtttcttatattttatcaaacattatttg-ttatcaaggta-atagtttaggatacacttttgttaa--caatgaaattacattattaattttaatatgttgacatataattgaatctgcagCTCAGGAAAATTTGATATTTCTAATTAAATGGATGTCGAGATTTCCTCAGTACCAATATAGAGATTTCTACATTGTTGGTGAAAGCTACGCTG
| | ||| | || | | | |||| || ||| | || || ||| | | | | || || | ||||| ||| | | |||| | |||||||||| || | |||||||||| ||||||||| ||||||||||| || ||||||| || || ||||||| ||| || ||||| || |
gtatatacgaatctaaagcattgttgatgttaatttaattgtcagcatttgccaccacatatccattttcataacttcccttgttctatatcactaattaccataag--aattccaaatttataacacagCTCAGGATGCACTGGTTTTTCTAATTAGATGGATGTCAAGATTTCCTCAATATAAATATAGGGAGTTTTACATTGCTGGAGAGAGCTATGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaatgaaattacattattaattttaatatgttgacatataattgaatctgcagCTCAGGAAAATTTGATATTTCTAATTAAATGGATGTCGAGATTTCCTCAGTACCAATATAGAGATTTCTACATTGTTGGTGAAAGCTACGCTG
       aaattacattattaat  TA-rich tract