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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagaatcggtttcttatgtaaaaggacgacacaatgttgatgttgtgcagcttagtcatgaatggttttatattctctagcagCCTCCAACAGAATTGATCAAGGAAATCGCGGTGTTGGAGTTAGAAGTTTCTCATTTGGAACAGTACCTTCTATCTTTGTATCGTAAAGCGTTTGATCAAC

Basic information

species Arabidopsis thaliana
transcript AT2G23700.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G23700.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA16G25820.1 (Glycine max), 3'ss of exon 1
gtaaagaatcggtttcttatgtaaaaggac-gacacaatgttgatgt--tgtgcagctta------gtcatgaatggt--tttatattctctagc---agCCTCCAACAGAATTGATCAAGGAAATCGCGGTGTTGGAGTTAGAAGTTTCTCATTTGGAACAGTACCTTCTATCTTTGTATCGTAAAGCGTTTGATCAAC
 | |  |  |  | | |    | ||||| | |  |  || ||  |||  |||  |||||       ||| ||| |  |  ||| | || | |  |   ||||  |  |  |||| || || ||||| || ||||| ||||||||||||   ||||||||||| || ||||| || |||||||||||||| ||||||||||
atgattatacattgtttaggattaaaggcctggtatgattttcttgtcatgtatagctttctgtttgtcttgacttctcttttttgttttttgactccagCCAACGTCCAAATTAATTAAAGAAATTGCAGTGTTAGAGTTAGAAGTTATGCATTTGGAACAATATCTTCTCTCCTTGTATCGTAAAGCATTTGATCAAC

upper sequence: AT2G23700.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G06790.1 (Glycine max), 3'ss of exon 2
gtaaaga-atcggtttcttatgtaaaaggacgacacaatgttgatgtt--gtgcagctt---agtcatgaatggttttat-----attctctagc---agCCTCCAACAGAATTGATCAAGGAAATCGCGGTGTTGGAGTTAGAAGTTTCTCATTTGGAACAGTACCTTCTATCTTTGTATCGTAAAGCGTTTGATCAAC
 | |  | ||  ||||  ||  || | |   |  |  |  ||  |||   ||   ||||     |  ||     ||||||      || | |  |   ||||  |  |  |||| || || ||||| |||||||| ||||||||||||    |||||||||| || ||||| || |||||||||||||| ||||||||||
atgattatatatgtttagtaattataggtctgctatgaatttcttgtcaagtatggctttctgtttgtgttgacttttatttttggttttttgactccagCCAACGTCCAAATTAATTAAAGAAATTGCGGTGTTAGAGTTAGAAGTTGTGTATTTGGAACAATATCTTCTCTCCTTGTATCGTAAAGCATTTGATCAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacaatgttgatgttgtgcagcttagtcatgaatggttttatattctctagcagCCTCCAACAGAATTGATCAAGGAAATCGCGGTGTTGGAGTTAGAAGTTTCTCATTTGGAACAGTACCTTCTATCTTTGTATCGTAAAGCGTTTGATCAAC
      tgttgat  putative branch site (score: 4)
                                          tattctct  putative PPT
                                aatggttttatatt  TA-rich tract