1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgcatgcattgagctcttgagattagttgaaacatattatctaacttcgtctagctgatgtatactattatcatttctcacttcatatttgatgagcagGTACTTTAAGGGTCCAGAGCTGCTGGTGGATTTACAGGACTATGATTATTCCTTAGACCTATGGAGTCTTGGGTGTATGTTTGCTGGAATG
species | Arabidopsis thaliana |
transcript | AT2G23070.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TACAATGTCCGTGTTGCTTCAAG GTACTTTAAGGGTCCAGAGCTGCTGGTGGATTTACAGGACTATGATTATTCEST: gi|125064591|gb|EL132160.1|EL132160
genomic: TACAATGTCCGTGTTGCTTCAAGgtagttcctt ... tgatgagcagGTACTTTAAGGGTCCAGAGCTGCTGGTGGATTTACAGGACTATGATTATTC
EST: CAGAATTCTATCATCCTGGG-AAGAATACAATGTCCGTGTTGCTTCAAG GTACTTTAAGGGTCCAGAGCTGCTGGTGGATTTACAGGACTATGATTATTCEST: gi|47831931|gb|CK121615.1|CK121615
genomic: CAGAATTCTATCATCCTGGGAAAGAATACAATGTCCGTGTTGCTTCAAGgtagttcctt ... tgatgagcagGTACTTTAAGGGTCCAGAGCTGCTGGTGGATTTACAGGACTATGATTATTC
EST: GCAGAATTCTATCATCCTGGGAAAGAATACAATGTCCGTGTTGCTTCAAG GTACTTTAAGGGTCCAGAGCTGCTGGTGGATTTACAGGACTATGATTATTCEST: gi|124852817|gb|EH937254.1|EH937254
genomic: GCAGAATTCTATCATCCTGGGAAAGAATACAATGTCCGTGTTGCTTCAAGgtagttcctt ... tgatgagcagGTACTTTAAGGGTCCAGAGCTGCTGGTGGATTTACAGGACTATGATTATTC
EST: TCCTGGGAAAGAATACAATGTCCGTGTTGCTTCAAG GTACTTTAAGGGTCCAGAGCTGCTGGTGGATTTACAGGACTATGATTATTC
genomic: TCCTGGGAAAGAATACAATGTCCGTGTTGCTTCAAGgtagttcctt ... tgatgagcagGTACTTTAAGGGTCCAGAGCTGCTGGTGGATTTACAGGACTATGATTATTC
cttcgtctagctgatgtatactattatcatttctcacttcatatttgatgagcagGTACTTTAAGGGTCCAGAGCTGCTGGTGGATTTACAGGACTATGATTATTCCTTAGACCTATGGAGTCTTGGGTGTATGTTTGCTGGAATG
tatactattatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcatgcattgagctcttgagattagttgaaacatattatctaacttcgtctagctgatgtatactattatcatttctcacttcatatttgatgagcagGTACTTTAAGGGTCCAGAGCTGCTGGTGGATTTACAGGACTATGATTATTCCTTAGACCTATGGAGTCTTGGGTGTATGTTTGCTGGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - aaacata