1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtttctgtttttctgtgtgtgagagattcccttgtatatatagatggtttgcatatgttaaaatgcatgatcaaacccgtgatgtgaattctttgcttggcgtttctttttttttcttgacttggtactttttggtatgacattgattcgctcttccttgctcttgtttcagCTTATCGGAAGCTGGCTAGGAATTACCATCCGGATGTGAACAA
species | Arabidopsis thaliana |
transcript | AT2G22360.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCGGTACTCGGAGTTTCGAAAAATGCAACCAAAGCTGAGATTAAAAGCG CTTATCGGAAGCTGGCTAGGAATTACCATCCGGATGTGAACAAEST: gi|86036066|gb|DR331819.1|DR331819
genomic: TTCGGTACTCGGAGTTTCGAAAAATGCAACCAAAGCTGAGATTAAAAGCGgtatgtttct ... cttgtttcagCTTATCGGAAGCTGGCTAGGAATTACCATCCGGATGTGAACAA
EST: TCGGTACTCGGAGTTTCGAAAAATGCAACCAAAGCTGAGATTAAAAAGCG CTTATCGGAAGCTGGCTAGGAATTACCATCCGGAT
genomic: TCGGTACTCGGAGTTTCGAAAAATGCAACCAAAGCTGAGATTAAAA-GCGgtatgtttct ... cttgtttcagCTTATCGGAAGCTGGCTAGGAATTACCATCCGGAT
tgacttggtactttttggtatgacattgattcgctcttccttgctcttgtttcagCTTATCGGAAGCTGGCTAGGAATTACCATCCGGATGTGAACAA
ttcgctcttccttgct CT-rich tract
tacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttctgtttttctgtgtgtgagagattcccttgtatatatagatggtttgcatatgttaaaatgcatgatcaaacccgtgatgtgaattctttgcttggcgtttctttttttttcttgacttggtactttttggtatgacattgattcgctcttccttgctcttgtttcagCTTATCGGAAGCTGGCTAGGAATTACCATCCGGATGTGAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG