Sequence
atgc intronic sequence ATGC exonic sequencegtcagtttctttgtctgctctatgtttgcatatggtctacttcttgatacttatatgtaatctgatgattccgtggtgaacacagGAATGATGGGTTCTGGGAAAACAACTGTGGGAAAGTTAATGTCCAAAGTGCTCGGTTATACGTTCTTTGACTG
Basic information
| species | Arabidopsis thaliana |
| transcript | AT2G21940.4 |
| intron # | 4 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G21940.4 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os02g51410.2 (Oryza sativa), 3'ss of exon 3
gtcagtttctttgtctgctctatgtttgcatatggtctacttc--------ttgatacttatatgtaatctgatgattccgt-ggtgaac------------acagGAATGATGGGTTCTGGGAAAACAACTGTGGGAAAGTTAATGTCCAAAGTGCTCGGTTATACGTTCTTTGACTG
|| |||| || || ||| || | || || || | | ||| || ||| |||||| | || | | || ||||||||||||||||||| |||| |||||||||||| | ||||| |||| | |||||| |||||||||| |
gttagtt-ctgaaacttctc-attcctccaaattatcagcactgaaaaagatcaatatatagatggcatctgaatttctggttgataaattaaaacatgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGTTATTCGTTCTTTGATAG
upper sequence: AT2G21940.4 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G161566_T02 (Zea mays), 3'ss of exon 3
gtcagtt-tctttgtctgctctatgtttgc---atatggtct--acttcttg-----------atacttatatgta-atctgatgattccgtggt-gaacacagGAATGATGGGTTCTGGGAAAACAACTGTGGGAAAGTTAATGTCCAAAGTGCTCGGTTATACGTTCTTTGACTG---------------------------
|| |||| || | || | |||||| | | |||| |||| | | ||| || || || |||||| | ||| | | ||||||||||||||||||| |||| |||||||| ||| | ||||| |||| | |||||| |||||||||| |
gttagttctcatcccttgtagtgcgtttgctataaagagtctcaacttttagatgaaactaccatatttggatttatgattgatgaatgagtgcttgtgtgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGGAAGATCATGTCTGAAGTCTTGGGTTATTCGTTCTTTGATAGGTATGTGTCTTTTTGTGAAAGTAAACT
upper sequence: AT2G21940.4 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G070218_T01 (Zea mays), 3'ss of exon 3
gtcagt--ttctttgtctgctctatgtttgc-atatgg----tctacttcttgata-----cttatatgtaatctgatgattccgtggtga----------acacagGAATGATGGGTTCTGGGAAAACAACTGTGGGAAAGTTAATGTCCAAAGTGCTCGGTTATACGTTCTTTGACTG
||| || | | || | | |||| ||| | | |||| | ||| |||| | | | ||||| |||| ||||||||||||||||||| |||| |||||||| ||| | ||||| |||| | |||||| |||||||||| |
gtccgtcctcatcctcctatgtcacgattgctataaagaatcccgacttttagatggaaataccatatttgaatttgtgattgatgagtgagagtgcgcgtgtgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGGAAGATTATGTCTGAAGTCTTGGGTTATTCGTTCTTTGATAG
upper sequence: AT2G21940.4 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G161566_T03 (Zea mays), 3'ss of exon 1
gtcagtt-tctttgtctgctctatgtttgc---atatggtct--acttcttgat-----------acttatatgta-atctgatgattccgtggt-gaacacagGAATGATGGGTTCTGGGAAAACAACTGTGGGAAAGTTAATGTCCAAAGTGCTCGGTTATACGTTCTTTGACTG
|| |||| || | || | |||||| | | |||| |||| | ||| | || || || |||||| | ||| | | ||||||||||||||||||| |||| |||||||| ||| | ||||| |||| | |||||| |||||||||| |
gttagttctcatcccttgtagtgcgtttgctataaagagtctcaacttttagatgaaactaccatatttggatttatgattgatgaatgagtgcttgtgtgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGGAAGATCATGTCTGAAGTCTTGGGTTATTCGTTCTTTGATAG
upper sequence: AT2G21940.4 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA05G31730.2 (Glycine max), 3'ss of exon 3
gtcagtttctttgtctgctctatgtttgcatatggtctacttcttgatacttatatgtaatctg--atgattccgtggtga-acacagGAATGATGGGTTCTGGGAAAACAACTGTGGGAAAGTTAATGTCCAAAGTGCTCGGTTATACGTTCTTTGACTG
||||||||||| || || ||| | ||||| | ||| | || | | | || || ||| || ||| ||||||||||||| |||||||||||||| ||||| ||| ||||||| ||||||| |||||| | || | ||| |
gtcagtttcttggttgacttcttgtgcttacatggtatgctt-tggaaattactttggcattaaaaatgctttgaatttgacgtgcagGAATGATGGGCTCTGGGAAAACAACAGTGGGGAAGATAATGTCGCAAGTGCTTGGTTATTCATTTTGTGATAG
upper sequence: AT2G21940.4 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA08G14980.1 (Glycine max), 3'ss of exon 3
gtcagtttctttgtctgctctatgt-ttgcatatggtctacttcttgatacttatatgtaatctga--tgattccgtggtga-acacagGAATGATGGGTTCTGGGAAAACAACTGTGGGAAAGTTAATGTCCAAAGTGCTCGGTTATACGTTCTTTGACTG
||||||||||| | || ||| | | ||||| | ||| | || | | | || || | || || ||| | ||||||||||||| |||||||||||||| ||||| ||| ||||||| ||||||| |||||| | || | ||| |
gtcagtttcttgattgacttcttgtgcttaacatggtatgctt-tggaaattactttggcattaaaaatgctttgaatttgacatgcagGAATGATGGGCTCTGGGAAAACAACGGTGGGGAAGATAATGTCACAAGTGCTTGGTTATTCATTTTGTGATAG
upper sequence: AT2G21940.4 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA06G15160.1 (Glycine max), 3'ss of exon 1
gtcagtttctttgtct----------gctcta-tgtttgcatatggtctacttcttgatacttatatgta------atctgatgattccg-tggtgaacacagGAATGATGGGTTCTGGGAAAACAACTGTGGGAAAGTTAATGTCCAAAGTGCTCGGTTATACGTTCTTTGACTG
|||||| |||| || | || || | | | | || | | | || ||| || | || | || || | | || ||||||||||||| |||||||| ||||||||||| ||| || |||| ||||||| |||| || || || |
gtcagtctcttggtattggtagaaggactttaatagatttctctagtagaagtacttatgcttgcattcattgcaaatataatattttggattagaaatgcagGAATGATGGGCTCTGGGAAGACAACTGTGGGGAAGATATTGTCACAAGTGCTTTCTTATTTATTTTTCGATAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86059499|gb|DR355256.1|DR355256EST: AGCAGAAGAGGTTAAACCGTATTTGAATGGACGATCTATGTACCTTGTCG GAATGATGGGTTCTGGGAAAACAACTGTGGGAAAGTTAATGTCCAAAGTGC
genomic: AGCAGAAGAGGTTAAACCGTATTTGAATGGACGATCTATGTACCTTGTCGgtcagtttct ... gtgaacacagGAATGATGGGTTCTGGGAAAACAACTGTGGGAAAGTTAATGTCCAAAGTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatggtctacttcttgatacttatatgtaatctgatgattccgtggtgaacacagGAATGATGGGTTCTGGGAAAACAACTGTGGGAAAGTTAATGTCCAAAGTGCTCGGTTATACGTTCTTTGACTG
atctgat putative branch site (score: 4)
atacttatatgtaat TA-rich tract
