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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattccgcttcatttcatcacttctaatactaatgggtataatcaggtcgtgtggttttgtcgtgtgaactacatgataagcttatgttgtgtggtatttaaacattcagGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCAGAGGTATACCGGTCCCTTGGTGAGAATTACCGCGAGAGAGTCTTGCCTT

Basic information

species Arabidopsis thaliana
transcript AT2G20530.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86023968|gb|DR319721.1|DR319721
EST:     CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATG                         GTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCA
genomic: CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATGgtattccgct ... aaacattcagGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCA
EST: gi|86023978|gb|DR319731.1|DR319731
EST:     CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATG                         GTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCA
genomic: CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATGgtattccgct ... aaacattcagGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCA
EST: gi|86023959|gb|DR319712.1|DR319712
EST:     CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATG                         GTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGNCTGACCAATTAC-A
genomic: CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATGgtattccgct ... aaacattcagGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCA
EST: gi|86023969|gb|DR319722.1|DR319722
EST:     CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATG                         GTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCA
genomic: CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATGgtattccgct ... aaacattcagGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCA
EST: gi|47828978|gb|CK118662.1|CK118662
EST:     CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATG                         GTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCA
genomic: CAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATGgtattccgct ... aaacattcagGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtcgtgtgaactacatgataagcttatgttgtgtggtatttaaacattcagGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCAGAGGTATACCGGTCCCTTGGTGAGAATTACCGCGAGAGAGTCTTGCCTT
                                        tatttaaacattca  TA-rich tract