Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtttatgatctttggtttgatactggtttgttttggattgtattaagacgcatcttagtgttattgaataacctctaatatatgaatattgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCTGCTTGATTTCTTAATTATGATCCATTACCAAATCTTATTTTTGCAACTG

Basic information

species Arabidopsis thaliana
transcript AT2G20450.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86022106|gb|DR317859.1|DR317859
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022101|gb|DR317854.1|DR317854
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022085|gb|DR317838.1|DR317838
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022084|gb|DR317837.1|DR317837
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022080|gb|DR317833.1|DR317833
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022078|gb|DR317831.1|DR317831
EST:     CTGCCCTCAATGATTTTKACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022070|gb|DR317823.1|DR317823
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022096|gb|DR317849.1|DR317849
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022087|gb|DR317840.1|DR317840
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022077|gb|DR317830.1|DR317830
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022097|gb|DR317850.1|DR317850
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGC
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGC
EST: gi|86022075|gb|DR317828.1|DR317828
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|47828553|gb|CK118237.1|CK118237
EST:     CTGCCCTCAATGATTNTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022093|gb|DR317846.1|DR317846
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022092|gb|DR317845.1|DR317845
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022094|gb|DR317847.1|DR317847
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022090|gb|DR317843.1|DR317843
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCMGGAGCYTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022074|gb|DR317827.1|DR317827
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022100|gb|DR317853.1|DR317853
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022076|gb|DR317829.1|DR317829
EST:     TGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTANAAAGGGAGATCGC
genomic: TGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAA-TCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGC
EST: gi|86022071|gb|DR317824.1|DR317824
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022104|gb|DR317857.1|DR317857
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022082|gb|DR317835.1|DR317835
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAWAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022081|gb|DR317834.1|DR317834
EST:     CTGCCCTCAATAATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022091|gb|DR317844.1|DR317844
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022073|gb|DR317826.1|DR317826
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022089|gb|DR317842.1|DR317842
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022079|gb|DR317832.1|DR317832
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022067|gb|DR317820.1|DR317820
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022086|gb|DR317839.1|DR317839
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022069|gb|DR317822.1|DR317822
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
EST: gi|86022107|gb|DR317860.1|DR317860
EST:     CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAG                         AGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT
genomic: CTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggtttac ... tgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagacgcatcttagtgttattgaataacctctaatatatgaatattgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCTGCTTGATTTCTTAATTATGATCCATTACCAAATCTTATTTTTGCAACTG
                                            ttgtttt  CT-rich tract
                             tctaatatatgaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggtttatgatctttggtttgatactggtttgttttggattgtattaagacgcatcttagtgttattgaataacctctaatatatgaatattgttttgcagAGGGCTGGTATTGTGAGGCAGGAGCTTGCTAAGCTAAAAAGGGAGATCGCTGCTTGATTTCTTAATTATGATCCATTACCAAATCTTATTTTTGCAACTG

ggtttat
- - - - - - - ggtttga
- - - - - - - - - - - - - - - gttttgg