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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcgaattgtttctgtaacttacattgtttagtatcgagcggatgggttttgtgagttttgatgctgagacttgtttaatctatcttctatgagtttgctaacattttgtttgctggttaaatttgtattagGCATCTCAAGATAAGAAGAGCCTGGATGTTGGTGCTAACCTTTTCATTGGAAACCTTGACCCT

Basic information

species Arabidopsis thaliana
transcript AT2G18510.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18510.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA12G36950.1 (Glycine max), 3'ss of exon 4
gtatcgaattgtttctgtaacttacattgtttagtatcgagcggatgggttttgtgagttttgatgctgagacttgtttaatctatcttctatgagtttgctaacattttgtttgctggttaaatttgtattagGCATCTCAAGATAAGAAGAGCCTGGATGTTGGTGCTAACCTTTTCATTGGAAACCTTGACCCT
           |   ||||  | |  | |||  ||||| |           |||| |  ||   |    | ||   |||| | |   | ||    ||||| |   ||||| |      | |   || ||  |||||||| |||||||| |||||||||||||||||||| || ||||||||||| || ||||| |||
-----------tccttgtag-taatgtagtt--gtatcaac------acccttgtca-cttgattaacaaaac--atttagttttcatgct----gtttgatgg-attttat------gattttttggttctagGCATCCCAAGATAAAAAGAGCCTGGATGTTGGTGCAAATCTTTTCATTGGCAATCTTGATCCT

upper sequence: AT2G18510.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA09G00310.1 (Glycine max), 3'ss of exon 4
gtatcgaattgtttctgtaacttacattgtttagtatcgagcggatgggttttgtgagttttgatgc-tgagacttgtttaatcta-tcttctatgagtttgctaacattttgtttgctggttaaatttgtattagGCATCTCAAGATAAGAAGAGCCTGGATGTTGGTGCTAACCTTTTCATTGGAAACCTTGACCCT
                                     |      ||   ||   ||  ||   |  | ||  ||||| ||||   | | ||   |   | ||||      ||| ||      |   || ||   ||||||| |||||||| |||||| |||||||||| || || ||||||||||| || || || |||
------------------------------------cctgctatatttcttccttgtattaacacccatgccacttgattaacaaaatatttagtttctatgctgcttgattgattttacaattttttggttccagGCATCCCAAGATAAAAAGAGCTTGGATGTTGGGGCAAATCTTTTCATTGGCAATCTAGATCCT

upper sequence: AT2G18510.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv04s0023g01470.t01 (Vitis vinifera), 3'ss of exon 4
----------------------gtatcgaattgtttctgtaacttacattgtttagtat----cgagcggatgggttttgtgagttttgatgctgagacttgtttaatct-atcttctatgagtttgctaacattttgtttgctggttaaatttgtattagGCATCTCAAGATAAGAAGAGCCTGGATGTTGGTGCTAACCTTTTCATTGGAAACCTTGACCCT
                       ||||  |||     | |  ||||  || |||   |      |||       || | || |  |||| |           |  | ||| ||    |||| ||||| ||  || || ||  |   ||  ||| ||   |||||||||||||||| |||||| |||||||||| || ||||||||  ||||||||||||| |||
gtgtgacatttattttcactagctatctcatttgccttatttcttatgttctttttcagactatgagttatgaagtgtagttatatttgtttggagcgtccataaattcttataaaatatgtgtttg-tatgatctttttccccttttttattggttccagGCATCTCAAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTTGGAAACCTTGATCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctatcttctatgagtttgctaacattttgtttgctggttaaatttgtattagGCATCTCAAGATAAGAAGAGCCTGGATGTTGGTGCTAACCTTTTCATTGGAAACCTTGACCCT
                   tgctaac  putative branch site (score: 1)
                                        ttaaatttgtatta  TA-rich tract