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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtttttgaaatgaatgtttgctacaagttttgatatgaatactctgaagaaagtcttttggttgtgatttttgctgctttatcttcgttttgcagTGGATCCCAGAGCTGAAGCATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAACTAG

Basic information

species Arabidopsis thaliana
transcript AT2G17800.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17800.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os02g02840.1 (Oryza sativa), 3'ss of exon 3
gtacgtttttgaaatgaatgtttgctacaagttttgatatgaatactctgaagaaagtcttttggttgtgatttttgctgcttt--atcttcgtt---ttgcagTGGATCCCAGAGCTGAAGCATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAACTAG
      | |||| |      |||| |     || ||    || |    |    |   ||   |  | ||  || ||| || ||   | ||| |||   || |||||||| || ||||||||||||||||| |||||||| |||||  | ||||| ||||| || || |
---ttatgttgatacttg-atttgatcatttttgtggctcgattcacttttttagtctccacttatggtacttcttgttgattctaaactttgttatatttcagTGGATACCTGAGCTGAAGCATTATGCACCTGGTGTGCCTATCATCCTTGTGGGAACAAAGCTTG

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA11G08380.1 (Glycine max), 3'ss of exon 4
---------------------------------------------------------------------------gtacgtttttgaa--atgaatgtttgctacaag-----ttttgatatgaatactc-tgaagaaagtcttttggttgtgatttttgctgctttatcttcgttttgcagTGGATCCCAGAGCTGAAGCATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAACTAG
                                                                           ||| |   |  ||  | | |||| ||   || |     |||| | |  |  | || |  | | |     | | |  | | ||    ||  |  | |   |||| |||||||| |||||| ||||||||||||| ||||||||||| ||  |||| ||||| || || || |
gtacttcgttgcaatttattgtggtcagagtgttttgggagaattcttatttcttttgagaatcatgaggtttctgtatggcctgtaacgaaggatgtatggatcatgttatattttaagaaaataattcatttatataaaaagtcgatgataaattgca-tgtctggtttc--tttttcagTGGATTCCAGAGTTGAAGCATTATGCACCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTG

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA01G36880.1 (Glycine max), 3'ss of exon 4
-------------------------------------------------------------------------------gtacgtttt----tgaa--atgaatg---tttgctacaagttttgatatgaatactctgaagaaagtcttttggttgtgatttttgctgctttatcttcgttttgcagTGGATCCCAGAGCTGAAGCATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAACTAG
                                                                               ||| |   |    ||||  ||| |||     || || | |||  || |  ||| |  | |  |||    |  | |  | | ||  ||   | |   ||| |||| |||||||| || ||| ||||||||||||| ||||||||||| ||  |||| ||||| || || || |
gtacttcgtggcaatttattgtggtcatagtgttttgggtgtatttcttcttatttattttgataattataaggtttctgtatggcctgtaatgaaggatgtatggatcatgttatatgttaagaaaataattcatttataaaaaaagtc-gatgataaatt--gcatgtgtggtttcatttt-cagTGGATTCCGGAGTTGAAGCATTATGCTCCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTG

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv04s0023g03860.t01 (Vitis vinifera), 3'ss of exon 4
-------------gtacgtttttgaaatgaatg---tttgctacaagttttgatatgaatactctgaa--gaaagtcttttggttgtga-----tttttgctgctttatcttcgttttgcagTGGATCCCAGAGCTGAAGCATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAACTAG
             | |      |||| |||  |   |||      |||   |  ||    | | |  |  | || |  ||  ||  ||      |||||  || ||   |||| |||| |||||||| |||||  ||||||||||||| |||||||| || |||||||||||||| || || || |
gtgaggacttgatggatcaaaatgaagtgatagcactttttagtgagtaaaggaataccaattttagatggcaatttattatgtcctgggagattttttaatgtttcggcttcatttt-cagTGGATTCCAGAATTGAAGCATTATGCACCTGGTGTTCCGATAGTTCTTGTTGGCACTAAGCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actctgaagaaagtcttttggttgtgatttttgctgctttatcttcgttttgcagTGGATCCCAGAGCTGAAGCATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAACTAG
                                    ctttatcttcgtttt  CT-rich tract
                        tgattttt  TA-rich tract