Sequence
atgc intronic sequence ATGC exonic sequencegttagttctattgtcagtttgcttcgttttagttcattatgtcgaatcgagttctaattcgggttttgtctttctccttcagGATTTCCAGCTCGGTGAAACAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACTTACCTTGCATAGACAATTGGCTCCTTAGACACG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G17730.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G17730.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA01G36760.1 (Glycine max), 3'ss of exon 5
----------------------gttagttctattgtcagttt--gcttcgttttagttcattatgtcgaatcgag--ttctaattcggg-----ttttgtctttctcc----ttcagGATTTCCAGCTCGGTGAAACAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACTTACCTTGCATAGACAATTGGCTCCTTAGACACG---------
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gttagtttttacactttacatcgtcaataccactagatgtctataccttgaactaaat-gttttctaagattgtgtattgtgatatatgaacatttctgcatttgtgcaatatatagGACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTCAGACATGGTTCTTGCC
upper sequence: AT2G17730.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA11G08540.1 (Glycine max), 3'ss of exon 4
----------------------gttagttctattgtcagtttgcttcgttttagttcattatgtcgaat----cgagttctaattcggg---ttttgtctttctcc----ttcagGATTTCCAGCTCGGTGAAACAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACTTACCTTGCATAGACAATTGGCTCCTTAGACACG---------
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gttagttcttacacttttctttgtcaataccactagatgtctatacc--ttgaactaaatatttctaagattgtgtattgtgatatgaacatttctgcatttgtgcaatatatagGACTTTATGCTTGGAGAGACAGTAAGAAGCTTACCTCATTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTCAGACATGGTTCTTGCC
upper sequence: AT2G17730.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G05000.1 (Glycine max), 3'ss of exon 4
-------------------gttagttctattgtcagtttgcttcgttttagttcattatgtcgaatcgagttctaattcgggttttgtctttctccttcagGATTTCCAGCTCGGTGAAACAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACTTACCTTGCATAGACAATTGGCTCCTTAGACACG---------
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agaaaaaaaaacttaggtatttgattttatt-ttatttctggtggtgataaagaaaagttgctaagcttgtttattttattgtgaatttttgcatttgcagGACTTTCAGCTTGGGGAGACTGGTAGAAGTTTGCCTCATTGTCATCACATTTTTCACCTACCTTGCATTGATAAGTGGCTGATCAAGCATGGTTCTTGCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86056622|gb|DR352379.1|DR352379EST: ATAACACTGATGCTTCTGAGAACACAGACTCATGTTCTGTTTGTCTTCAG GATTTCCAGCTCGGTGAAACAGTTAGAAGCTTGCCTCATTGTCATCACATG
genomic: ATAACACTGATGCTTCTGAGAACACAGACTCATGTTCTGTTTGTCTTCAGgttagttcta ... tctccttcagGATTTCCAGCTCGGTGAAACAGTTAGAAGCTTGCCTCATTGTCATCACATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttagttcattatgtcgaatcgagttctaattcgggttttgtctttctccttcagGATTTCCAGCTCGGTGAAACAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACTTACCTTGCATAGACAATTGGCTCCTTAGACACG
ttctaat putative branch site (score: 2)
ttttgtctttctcctt putative PPT
ttcattat TA-rich tract