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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaaggcatctttaaaaatattaaacctttttgtgcaatattctcaaaccatgagtaagaggatctgaatattcttatctttcttggacagGAAAATACACACCACAGTACCAATGGCTCGAAGAGGAGTTCCCAAAGGTTAACAGAACGGAAACTCCGTGGTTGATTGTTCTGATGCATTCACCATGGTA

Basic information

species Arabidopsis thaliana
transcript AT2G16430.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G16430.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA09G36360.1 (Glycine max), 3'ss of exon 5
-----gcaaggcatctttaaaaatattaaacctttttgtgcaatattctcaaaccatgagtaagagga---tctgaatattcttatctttc--ttggacagGAAAATACACACCACAGTACCAATGGCTCGAAGAGGAGTTCCCAAAGGTTAACAGAACGGAAACTCCGTGGTTGATTGTTCTGATGCATTCACCATGGTA
     ||      |  ||  |   | |  || |  |  ||  |||| |        | |    ||      | |   |||  | ||||| |  ||   |||||||||| |||||||| ||  ||||||| ||||||||| | || || |||||||| || || ||||| |||||||||||||||||||||||||| |||||
ctgccgctgttactgcttggattaaatgcacataatc-tgtgatatccctgtttttttaaagtgatatctcttttgttataataatcttccattttctcagGAAAATATACACCACAATATAAATGGCTTGAAGAGGAGCTACCGAAAGTTAACAGGACAGAGACTCCTTGGTTGATTGTTCTGATGCATTCACCTTGGTA

upper sequence: AT2G16430.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA12G01000.1 (Glycine max), 3'ss of exon 5
------gcaaggcatctttaaaaatattaaacctttttgtgcaatattctcaaaccatgagtaagagga-tctgaatattcttatctttc--ttggacagGAAAATACACACCACAGTACCAATGGCTCGAAGAGGAGTTCCCAAAGGTTAACAGAACGGAAACTCCGTGGTTGATTGTTCTGATGCATTCACCATGGTA
            |  |||  |  | ||  |  | |  | ||  ||||  |         |||   |    | |   ||   | ||||| |  ||   |||||||||| |||||||| ||  ||||||| ||| ||||| | || || |||||||| || || ||||| |||||||||||||| ||||||||||| |||||
gctgttctgttactacttggattaaatgcacacataatctgagatatcattgtttttaaagtggtatctcttttgttacaataatcttccattttctcagGAAAATATACACCACAATATAAATGGCTTGAAAAGGAGCTACCGAAAGTTAACAGGACAGAGACTCCTTGGTTGATTGTTCTCATGCATTCACCTTGGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattctcaaaccatgagtaagaggatctgaatattcttatctttcttggacagGAAAATACACACCACAGTACCAATGGCTCGAAGAGGAGTTCCCAAAGGTTAACAGAACGGAAACTCCGTGGTTGATTGTTCTGATGCATTCACCATGGTA
                                 tattcttatctttctt  CT-rich tract
                               aatattcttatcttt  TA-rich tract