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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaaggcatctttaaaaatattaaacctttttgtgcaatattctcaaaccatgagtaagaggatctgaatattcttatctttcttggacagGAAAATACACACCACAGTACCAATGGCTCGAAGAGGAGTTCCCAAAGGTTAACAGAACGGAAACTCCGTGGTTGATTGTTCTGATGCATTCACCATGGTA

Basic information

species Arabidopsis thaliana
transcript AT2G16430.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G16430.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA09G36360.1 (Glycine max), 3'ss of exon 5
-----gcaaggcatctttaaaaatattaaacctttttgtgcaatattctcaaaccatgagtaagagga---tctgaatattcttatctttc--ttggacagGAAAATACACACCACAGTACCAATGGCTCGAAGAGGAGTTCCCAAAGGTTAACAGAACGGAAACTCCGTGGTTGATTGTTCTGATGCATTCACCATGGTA
|| | || | | | || | | || |||| | | | || | | ||| | ||||| | || |||||||||| |||||||| || ||||||| ||||||||| | || || |||||||| || || ||||| |||||||||||||||||||||||||| |||||
ctgccgctgttactgcttggattaaatgcacataatc-tgtgatatccctgtttttttaaagtgatatctcttttgttataataatcttccattttctcagGAAAATATACACCACAATATAAATGGCTTGAAGAGGAGCTACCGAAAGTTAACAGGACAGAGACTCCTTGGTTGATTGTTCTGATGCATTCACCTTGGTA

upper sequence: AT2G16430.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA12G01000.1 (Glycine max), 3'ss of exon 5
------gcaaggcatctttaaaaatattaaacctttttgtgcaatattctcaaaccatgagtaagagga-tctgaatattcttatctttc--ttggacagGAAAATACACACCACAGTACCAATGGCTCGAAGAGGAGTTCCCAAAGGTTAACAGAACGGAAACTCCGTGGTTGATTGTTCTGATGCATTCACCATGGTA
| ||| | | || | | | | || |||| | ||| | | | || | ||||| | || |||||||||| |||||||| || ||||||| ||| ||||| | || || |||||||| || || ||||| |||||||||||||| ||||||||||| |||||
gctgttctgttactacttggattaaatgcacacataatctgagatatcattgtttttaaagtggtatctcttttgttacaataatcttccattttctcagGAAAATATACACCACAATATAAATGGCTTGAAAAGGAGCTACCGAAAGTTAACAGGACAGAGACTCCTTGGTTGATTGTTCTCATGCATTCACCTTGGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattctcaaaccatgagtaagaggatctgaatattcttatctttcttggacagGAAAATACACACCACAGTACCAATGGCTCGAAGAGGAGTTCCCAAAGGTTAACAGAACGGAAACTCCGTGGTTGATTGTTCTGATGCATTCACCATGGTA
                                 tattcttatctttctt  CT-rich tract
 aatattcttatcttt  TA-rich tract