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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagatttacattgtaatgttttcgctttttttgcacttgtatatattaaatgcttctgagttttgaagGATGTTCCTACTGGAGAGCTTCCAAGAAATATGCTTCTCTCAGTTGATCGGCATCTTGTACAAACAATTGTACCTGGAACCAGACTGACAGTAATGGGTA

Basic information

species Arabidopsis thaliana
transcript AT2G07690.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G07690.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA13G22420.1 (Glycine max), 3'ss of exon 4
------gtatagatttacat-----tgtaatgttttcgcttttt-----ttgcacttgta--tatattaaatgcttctgagttttgaagGATGTTCCTACTGGAGAGCTTCCAAGAAATATGCTTCTCTCAGTTGATCGGCATCTTGTACAAACAATTGTACCTGGAACCAGACTGACAGTAATGGGTA
       || | ||||  ||     |  ||  ||   |    ||     ||| | || ||   ||||  ||||||  ||| | |||||||||||||| ||||| |||||||| |||||  |||||||||| |||||||| ||||| || || ||| | ||||||||  | ||| ||||| | ||||| |
gtattaatacaaatttgaataaaaataaaacattaaagtcacttgaaaattgaaattataaccatatgtaatgctg-tgattattgaagGATGTTCCAACTGGTGAGCTTCCTAGAAACTTGCTTCTCTCTGTTGATCGACATCTGGTTCAGACAGTGGTACCTGGCTCAAGATTGACAATCATGGGAA

upper sequence: AT2G07690.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA17G11220.1 (Glycine max), 3'ss of exon 4
---------gtatagatttacatt---gtaatgttttcgctttttttgcacttgtatatatta--aatgcttctgagttttgaagGATGTTCCTACTGGAGAGCTTCCAAGAAATATGCTTCTCTCAGTTGATCGGCATCTTGTACAAACAATTGTACCTGGAACCAGACTGACAGTAATGGGTA
          || | ||||   ||     ||   |||    |   ||| | || ||   |||   ||||||  ||| | |||||||||||||| |||||||| ||||| |||||  ||||||||||  ||||||| ||||| || || ||| | || |||||  | ||| ||||| | ||||| |
gtagtagtaatacaaatttgattttaaaaaaaacttttaagtcacttgaaattataagcatttgcaatgctg-tgattattgaagGATGTTCCAACTGGAGAACTTCCTAGAAACCTGCTTCTCTCTCTTGATCGACATCTGGTTCAGACAGTGGTGCCTGGCTCAAGATTGACAATCATGGGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116420153|gb|EG462745.1|EG462745
EST:     GGAGCCAGTATGTTGATCAACAGACCTTAAAGCTACAGGAGAATCCGGAG                         GATGTTCCTACTGGAGAGCTTCCAAGAAATATGCTTCTCTCAGTTGATCGG
genomic: GGAGCCAGTATGTTGATCAACAGACCTTAAAGCTACAGGAGAATCCGGAGgtatagattt ... agttttgaagGATGTTCCTACTGGAGAGCTTCCAAGAAATATGCTTCTCTCAGTTGATCGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgttttcgctttttttgcacttgtatatattaaatgcttctgagttttgaagGATGTTCCTACTGGAGAGCTTCCAAGAAATATGCTTCTCTCAGTTGATCGGCATCTTGTACAAACAATTGTACCTGGAACCAGACTGACAGTAATGGGTA
                     acttgtatatattaaa  TA-rich tract