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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattatcatggatcttcacaaattcgcattttcaaaaacaatatccgtcaaagagaggcatcaggtttttagcattctttttctcttgtgattgatacagCTTAATCAGCAATGTGAAGACAGGAATGTGCTACGATATGTTTATTATTACCTAGCTAGAATTTTGTCCGATACGGGCATGACTCCAGGGGGTGGTATCC

Basic information

species Arabidopsis thaliana
transcript AT2G07360.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G07360.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA05G36530.1 (Glycine max), 3'ss of exon 4
aattatcatggatcttcacaaattcgcattttcaaaaacaatatccgtcaaagagaggcatcaggtttttagcattctttttctct-tgtgattgatacagCTTAATCAGCAATGTGAAGACAGGAATGTGCTACGATATGTTTATTATTACCTAGCTAGAATTTTGTCCGATACGGGCATGACTCCAGGGGGTGGTATCC----
|||  |     |  ||  || | |   ||||    |   ||| |   |      |    ||| | || | |  ||  | | ||||| | |   |  |  |||||||||||||||||||||| || | ||| || ||||| || ||||| ||||| || |||||||| || || || ||     | ||| ||  ||    |     
aatagtacaataatttgtcatactgatatttcgttatggaatgtgtttacccttgcttaatctg-ttgtcaaaatcttgtatctctgtctctgttctgtagCTTAATCAGCAATGTGAAGATAGAAGTGTTCTCCGATACGTCTATTACTACCTTGCCAGAATTTTATCTGACACTGGT----CCCCAAGGTTTGAGCACAGGTG

upper sequence: AT2G07360.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 5
aattatcatggatcttcacaaattcgcattttcaaaaacaatatccgtcaaagaga---ggcatcaggtttttagcattctttttctcttgtgattgatacagCTTAATCAGCAATGTGAAGACAGGAATGTGCTACGATATGTTTATTATTACCTAGCTAGAATTTTGTCCGATAC--GGGCATGAC-TCCAGGGGGTGGTATCC
   ||| | |     |   ||    |  |  || ||     |  |    |||       || |   ||   |    |||||| |    ||||   | || |||||||||||||| |||||||| |||| ||| || |||||||| |||||||||||||| ||||||||||| |||||  | |||  |  |  | |   ||||    
---tatgaagtgctctgtaaagaatgagtcatctaatttgttgacgtataaactactatggtacatggccatcttgattcttatctgtttgttcattatgcagCTTAATCAGCAGTGTGAAGATAGGACTGTTCTGCGATATGTCTATTATTACCTAGCCAGAATTTTGTCAGATACCAGTGCACAAGGTTTAAGTTCTGGTG---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtcaaagagaggcatcaggtttttagcattctttttctcttgtgattgatacagCTTAATCAGCAATGTGAAGACAGGAATGTGCTACGATATGTTTATTATTACCTAGCTAGAATTTTGTCCGATACGGGCATGACTCCAGGGGGTGGTATCC
                                            gattgat  putative branch site (score: 4)
                            attcttttt  TA-rich tract