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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttatttcatattcatcgcatatacgtgactaaaggtggaacgtatggatggtttatacagattagttcttagtgtcattataagtatcttgaagaggaattgataaagcatatgttcccatattataaagaaggagtagtgacgaaatgtgtcgtcttttcgaattcacttgacagGAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAGATTGCGCTAGACGCAGCCAAGGGTCTTGCATTTCTTCATGGTGCTGAACGCTCCATCATATA

Basic information

species Arabidopsis thaliana
transcript AT2G07180.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G07180.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv11s0065g00470.t01 (Vitis vinifera), 3'ss of exon 3
gtaagtttatttcatattcatcgcatatacgtgactaaaggtggaacgtatggatggtttatacagattagttcttagtgtcattataagtatcttgaagaggaattgataaagcatatgttcccatattataaagaaggagtagtgacgaaatgtgtcgtcttttcgaattcacttgacagGAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAGATTGCGCTAGACGCAGCCAAGGGTCTTGCATTTCTTCATGGTGCTGAACGCTCCATCATATA
                                                                     |  |   | |||||            | || |   |||| | ||  || |||||       || ||  |    |  || |  | | ||| || |||    ||   || |  ||| ||  |    ||  |||| ||| ||| |||||||||||||||  |||| ||||| || |||||||| |||||||||||||| ||| | || ||||||||
---------------------------------------------------------------------atcttaaaatgtcaaagctttggctctcaacaaatattg-ttaattatttgttca------atgaaatatttttcatgtccta-tttgttgtattt----atctgct-ggtagGGGTGTGTGCTACACTGACTTGGTCAACAAGAATGAAGATTGCTTTAGATGCAGCAAAAGGTCTTGCTTTTCTTCATGGTGCAGAAAGGTCTATCATATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124861213|gb|EH945650.1|EH945650
EST:     AGCCTTGAGAAACATCTTTTCCGAA                         GAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAGATTGCGCTAGACG
genomic: AGCCTTGAGAAACATCTTTTCCGAAgtaagtttat ... cacttgacagGAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAGATTGCGCTAGACG
EST: gi|125188737|gb|EL203691.1|EL203691
EST:     AGCCTTGAGAAACATCTTTTCCGAA                         GAGTTGGATGCACTTTGACATGGACAAAAAGAAATGAAGATTGCGCTAGAC
genomic: AGCCTTGAGAAACATCTTTTCCGAAgtaagtttat ... cacttgacagGAGTTGGATGCACTTTGACATGGACAAAAAGAA-TGAAGATTGCGCTAGAC
EST: gi|125303113|gb|EL317198.1|EL317198
EST:     AGCCTTGAGAAACATCTTTTCCGAA                         GAGTTGGATGCACTTTGACATGGACAAAAAAGAAATGAAGATTGCGCTAGA
genomic: AGCCTTGAGAAACATCTTTTCCGAAgtaagtttat ... cacttgacagGAGTTGGATGCACTTTGACATGGACAAAAA-GAA-TGAAGATTGCGCTAGA
EST: gi|125066721|gb|EL133489.1|EL133489
EST:     AGTCTATGAATACATGGCAATGGGGAGCCTTGAGAAACATCTTTTCCGAA                         GAGTTGGATGCACTTTGACATGGACAA
genomic: AGTCTATGAATACATGGCAATGGGGAGCCTTGAGAAACATCTTTTCCGAAgtaagtttat ... cacttgacagGAGTTGGATGCACTTTGACATGGACAA
EST: gi|125102240|gb|EL157067.1|EL157067
EST:     TGAATACATGGCAATGGGGAGCCTTGAGAAACATCTTTTCCGAA                         GAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAGATTGCGCTAGACG
genomic: TGAATACATGGCAATGGGGAGCCTTGAGAAACATCTTTTCCGAAgtaagtttat ... cacttgacagGAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAGATTGCGCTAGACG
EST: gi|124794732|gb|EH884411.1|EH884411
EST:     AAACATCTTTTCCGAA                         GAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAGATTGCGCTAGACG
genomic: AAACATCTTTTCCGAAgtaagtttat ... cacttgacagGAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAGATTGCGCTAGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attataaagaaggagtagtgacgaaatgtgtcgtcttttcgaattcacttgacagGAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAGATTGCGCTAGACGCAGCCAAGGGTCTTGCATTTCTTCATGGTGCTGAACGCTCCATCATATA
                                           ttcactt  CT-rich tract