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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaagaagtttcgtaattcatctgtgtgtgtgccttttgcttttgtaagtttagctcattctctgtgcttgttgttcttcagGCATATATTGAAGCTAGTGAGGATATGCTTGAAGATGATGTTGTTTCAAACAAAGCTATAGGAAACTTTGGTTTAAGCTTGTTGAGGCAACAAGCCAAGA

Basic information

species Arabidopsis thaliana
transcript AT2G05830.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124725282|gb|EH816684.1|EH816684
EST:     TTATAGCAAAGGCCTTGGCTACTGCCACCGAAGCCAAATCCATTTTCAAG                         GCATATATTGAAGCTAGTGAGGATATGCTTGAAGATGAT
genomic: TTATAGCAAAGGCCTTGGCTACTGCCACCGAAGCCAAATCCATTTTCAAGgtatcaagaa ... tgttcttcagGCATATATTGAAGCTAGTGAGGATATGCTTGAAGATGAT
EST: gi|116462299|gb|EG504891.1|EG504891
EST:     TTATAGCAAAGGCCTTGGCTACTGCCACCGAAGCCAAATCCATTTTCAAG                         GCATATATTGAAGCTAGTGAGGATATGCTTGAAGATGATGTTGTTTCAAAC
genomic: TTATAGCAAAGGCCTTGGCTACTGCCACCGAAGCCAAATCCATTTTCAAGgtatcaagaa ... tgttcttcagGCATATATTGAAGCTAGTGAGGATATGCTTGAAGATGATGTTGTTTCAAAC
EST: gi|47831314|gb|CK120998.1|CK120998
EST:     TTATAGCAAAGGCCTTGGCTACTGCCACCGAACCCAAATCCATTTTCAAG                         GCATATATTGAAGCG-GCTGAGGATATGCTTGAAGATGATGTTGTTTCAAA
genomic: TTATAGCAAAGGCCTTGGCTACTGCCACCGAAGCCAAATCCATTTTCAAGgtatcaagaa ... tgttcttcagGCATATATTGAAGCTAG-TGAGGATATGCTTGAAGATGATGTTGTTTCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtgccttttgcttttgtaagtttagctcattctctgtgcttgttgttcttcagGCATATATTGAAGCTAGTGAGGATATGCTTGAAGATGATGTTGTTTCAAACAAAGCTATAGGAAACTTTGGTTTAAGCTTGTTGAGGCAACAAGCCAAGA
                                            ttgttcttc  CT-rich tract
             ttttgtaa  TA-rich tract