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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaggctagctaattgtattagtgtttgtctgtggagattgattagtttccttattactgattctctttaggtgtttttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCG

Basic information

species Arabidopsis thaliana
transcript AT2G05590.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116400804|gb|EG443396.1|EG443396
EST:     GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAG                         GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGCGAACCACGCATA
genomic: GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGgcaggctagc ... ttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
EST: gi|116400393|gb|EG442985.1|EG442985
EST:     GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAG                         GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
genomic: GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGgcaggctagc ... ttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
EST: gi|116400815|gb|EG443407.1|EG443407
EST:     GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAG                         GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
genomic: GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGgcaggctagc ... ttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
EST: gi|116398153|gb|EG440745.1|EG440745
EST:     GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAG                         GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
genomic: GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGgcaggctagc ... ttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
EST: gi|116400818|gb|EG443410.1|EG443410
EST:     GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAG                         GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
genomic: GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGgcaggctagc ... ttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
EST: gi|116400408|gb|EG443000.1|EG443000
EST:     GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAG                         GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
genomic: GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGgcaggctagc ... ttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
EST: gi|116400416|gb|EG443008.1|EG443008
EST:     GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAG                         GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
genomic: GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGgcaggctagc ... ttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
EST: gi|116400808|gb|EG443400.1|EG443400
EST:     GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAG                         GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
genomic: GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGgcaggctagc ... ttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
EST: gi|116400414|gb|EG443006.1|EG443006
EST:     GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAG                         GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
genomic: GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGgcaggctagc ... ttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
EST: gi|116398150|gb|EG440742.1|EG440742
EST:     GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAA-TATCAG                         GGTACAAGCCAGACATTC
genomic: GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGgcaggctagc ... ttgatgatagGGTACAAGCCAGACATTC
EST: gi|116400807|gb|EG443399.1|EG443399
EST:     GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAG                         GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
genomic: GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGgcaggctagc ... ttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
EST: gi|116400410|gb|EG443002.1|EG443002
EST:     GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAG                         GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
genomic: GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGgcaggctagc ... ttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
EST: gi|116400813|gb|EG443405.1|EG443405
EST:     GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAG                         GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
genomic: GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGgcaggctagc ... ttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
EST: gi|116400805|gb|EG443397.1|EG443397
EST:     GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAG                         GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGCGAACCACGCATA
genomic: GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGgcaggctagc ... ttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
EST: gi|116400814|gb|EG443406.1|EG443406
EST:     GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAG                         GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
genomic: GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGgcaggctagc ... ttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
EST: gi|116400810|gb|EG443402.1|EG443402
EST:     GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAG                         GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA
genomic: GAGCTCTGTTGGAATGTCCACTGCAACCTACTCCTAAGAGGAAATATCAGgcaggctagc ... ttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggagattgattagtttccttattactgattctctttaggtgtttttgatgatagGGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCG
                                        tgttttt  CT-rich tract
     attgatta  TA-rich tract