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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgaaacggaaaatcattcatcttttggtacgattttggttaatggtttaactgatatgttttgtggttttgtgtaacttacagGTGCAGGAATATGTTGAAGCTGCAACGTTTTATAAGTTCTGTTTGTCTGGGACGCTATGTACTCTCGATGAGATTAACACAACGCTTGTACCACTTAGTG

Basic information

species Arabidopsis thaliana
transcript AT2G03780.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877137|gb|AU237968.1|AU237968
EST:     AGCTTCAAGGGACTGATTTTTGGAAGCTGAGACGTGCTTATTCCCCAGGG                         GTGCAGGAATATGTTGAAGCTGCAACGTTTTATAAGTTCTGTTTGTCTGGG
genomic: AGCTTCAAGGGACTGATTTTTGGAAGCTGAGACGTGCTTATTCCCCAGGGgtttgtgaaa ... taacttacagGTGCAGGAATATGTTGAAGCTGCAACGTTTTATAAGTTCTGTTTGTCTGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgattttggttaatggtttaactgatatgttttgtggttttgtgtaacttacagGTGCAGGAATATGTTGAAGCTGCAACGTTTTATAAGTTCTGTTTGTCTGGGACGCTATGTACTCTCGATGAGATTAACACAACGCTTGTACCACTTAGTG
                                          gtgtaac  putative branch site (score: 3)
 atatgtttt  TA-rich tract