Sequence
atgc intronic sequence ATGC exonic sequencegtaactctcctgctcccctgccaatggcatgttttttatggaatgtatcaaaattaaagtaactgacgacttgatgtgtatcttgaaatgcagTACTTTCAAAGGCACACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTTTTGGTTGTTGGATCTAGCAAACAATACAGTACAG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G02860.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G02860.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os02g58080.1 (Oryza sativa), 3'ss of exon 4
-------gtaactctcctgctcccctgccaatggcatgttttttatggaatgtatcaaaattaaagtaactgacgacttgatgtgtatcttgaaatgcagTACTTTCAAAGGCACACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTTTTGGTTGTTGGATCTAGCAAACAATACAGTACAG
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gtaatctttgatacttctacttcctt--tgatagttttcttcacatcaagtgtgccgccactaaaatgacgag-----tactgtttgtt--------cagTACATATAAAGGTTCAAGATTTCGAGCAGCTATTATTTTCGTTCTTGGGTTCTGGATGTTGGATCTCGCAAACAATACAGTTCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124704475|gb|EH795877.1|EH795877EST: CTGTTAGGAGATTCAAAGGAACATTGCAG TACTTTCAAAGGCGCACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTT
genomic: CTGTTAGGAGATTCAAAGGAACATTGCAGgtaactctcc ... tgaaatgcagTACTTTCAAAGGCACACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggaatgtatcaaaattaaagtaactgacgacttgatgtgtatcttgaaatgcagTACTTTCAAAGGCACACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTTTTGGTTGTTGGATCTAGCAAACAATACAGTACAG
tatcaaaattaaagta TA-rich tract