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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactctcctgctcccctgccaatggcatgttttttatggaatgtatcaaaattaaagtaactgacgacttgatgtgtatcttgaaatgcagTACTTTCAAAGGCACACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTTTTGGTTGTTGGATCTAGCAAACAATACAGTACAG

Basic information

species Arabidopsis thaliana
transcript AT2G02860.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02860.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os02g58080.1 (Oryza sativa), 3'ss of exon 4
-------gtaactctcctgctcccctgccaatggcatgttttttatggaatgtatcaaaattaaagtaactgacgacttgatgtgtatcttgaaatgcagTACTTTCAAAGGCACACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTTTTGGTTGTTGGATCTAGCAAACAATACAGTACAG
        | |  || || || || |    || |  |  ||   ||  | |||  |   | |||| | ||        |  ||| | |         |||||| |  |||||  || ||    | |||||| || | ||  |  ||||||| ||| |||||||||| |||||||||||||| || 
gtaatctttgatacttctacttcctt--tgatagttttcttcacatcaagtgtgccgccactaaaatgacgag-----tactgtttgtt--------cagTACATATAAAGGTTCAAGATTTCGAGCAGCTATTATTTTCGTTCTTGGGTTCTGGATGTTGGATCTCGCAAACAATACAGTTCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124704475|gb|EH795877.1|EH795877
EST:     CTGTTAGGAGATTCAAAGGAACATTGCAG                         TACTTTCAAAGGCGCACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTT
genomic: CTGTTAGGAGATTCAAAGGAACATTGCAGgtaactctcc ... tgaaatgcagTACTTTCAAAGGCACACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaatgtatcaaaattaaagtaactgacgacttgatgtgtatcttgaaatgcagTACTTTCAAAGGCACACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTTTTGGTTGTTGGATCTAGCAAACAATACAGTACAG
       tatcaaaattaaagta  TA-rich tract