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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaagcctaaaagtttcttcttttctcacttttttggttttctcctttccaaagattctaataaaatgaacatgacatgatttgcagGTATTCTCGTTGCTTATATCGCGTTTGGAGAAAACGATATCAAACTGAGAGCTGAAAGGTTTCTAAGCAGTATCACAAACTCGATTGAAATGGTACTAAG

Basic information

species Arabidopsis thaliana
transcript AT2G02480.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02480.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv12s0035g01960.t01 (Vitis vinifera), 3'ss of exon 3
--gtaaaaagcctaaaagtttcttcttttctcactttt-ttggttttctcct-------ttccaaagattctaataaaatgaacatgacatgatttgcagGTATTCTCGTTGCTTATATCGCGTTTGGAGAAAACGATATCAAACTGAGAGCTGAAAGGTTTCTAAGCAGTATCACAAACTCGATTGAAATGGTACTAAG
  || |||    | |  ||||||     |   || |    ||| || |||||       | ||       ||         || |||       ||||||||  ||| ||||||||| | || |||   ||  | ||||| |||   |||||||| |||||||| || |||||||||||||| ||||| || ||  | ||
gggtcaaagtttttattgtttctgaacctgctacgtaagctggcttactcctaataatttgcctcctgagctctctggtctaatatggttctgcttgcagGTGGTCTGGTTGCTTATGTTGCATTTCAGGATGAAGATATTAAATGTAGAGCTGAGAGGTTTCTGAGTAGTATCACAAACTCAATTGAGATAGTTATGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggttttctcctttccaaagattctaataaaatgaacatgacatgatttgcagGTATTCTCGTTGCTTATATCGCGTTTGGAGAAAACGATATCAAACTGAGAGCTGAAAGGTTTCTAAGCAGTATCACAAACTCGATTGAAATGGTACTAAG
                       ttctaat  putative branch site (score: 2)
                  aaagattctaataaaa  TA-rich tract