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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggtgttagctagctctttgagttattcagtttgtatgctctatttatcttctaaagccaattttacttgctttcttgcagTTAATCTCAGCCGTCATGACTCGTCAGTCGCAACTGCGTTTGCTCAACCGCCTTCAACGGCAAGGTCTGTGTCAATGAGAGACATGGGAACTGAAATGAC

Basic information

species Arabidopsis thaliana
transcript AT2G02170.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02170.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv01s0010g01760.t01 (Vitis vinifera), 3'ss of exon 3
------------gtggtgtt--agctagctctttgagttattcagttt-gtatgctctatttatcttctaa-agcca-attttacttgc-tttcttgcagTTAATCTCAGCCGTCATGACTCGTCAGT------------CGCAACTGCGTTTGCTCAACCGCCTTCAACGGCAAGGTCTGTGTCAATGAGAGACATGGGAACTGAAATGAC
             | ||||   | | | |   ||  |    ||| |   ||  ||| |  |||   | |||  | || || | |  ||  | | |||||||||  ||||| || |||||  | ||  |             |||||| | |||  || ||| |||||||| || |||||||||||||||||||| |||||            
gcagtgcagtgtattgtgtctcaaccatcatattccgcatatcactaaagtgagctatggttaaaatttaatggtcatatgtgatgtgtatcttttgcagTTAGCCTCAGTCGGCATGATCCATCCATGTCCATTCACAGTGCAACTACATTTATTCCACCTCCTTCAACTGCTAGGTCTGTGTCAATGAGAGATATGGG------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164082121|gb|ES151284.1|ES151284
EST:     GAACTCTATTGTAGAATCAGCAACTGAAG                         TTAATCTCAGCCGTCATGACTCGTCAGTCGCAACTGCGTTTGCTCAACCGC
genomic: GAACTCTATTGTAGAATCAGCAACTGAAGgtggtgttag ... tttcttgcagTTAATCTCAGCCGTCATGACTCGTCAGTCGCAACTGCGTTTGCTCAACCGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtttgtatgctctatttatcttctaaagccaattttacttgctttcttgcagTTAATCTCAGCCGTCATGACTCGTCAGTCGCAACTGCGTTTGCTCAACCGCCTTCAACGGCAAGGTCTGTGTCAATGAGAGACATGGGAACTGAAATGAC
                       ttctaaa  putative branch site (score: 2)
                                   ttttacttgctttctt  putative PPT
               tatttatcttctaaa  TA-rich tract