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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacattttctttcataatcacatatatatatctcaatcttctttttgaaattttctactaattataacttatgttattgaaatatcagGATTTAGATTTAGAGATTAAAAAGTCGCGTGCCACATGGAAATTTGTCGTGGGACATCACGGGATCAAAACCGCAGGTAATCACGGTGTGACTCAAGAGC

Basic information

species Arabidopsis thaliana
transcript AT2G01880.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878882|gb|AU239713.1|AU239713
EST:     ATTGGAGAAATGTCTTACCAAGAAATAAATACATCTCAAACCTCTTACAT                         GATTTAGATTTAGAGATTAAAAAG
genomic: ATTGGAGAAATGTCTTACCAAGAAATAAATACATCTCAAACCTCTTACATgtaatacatt ... gaaatatcagGATTTAGATTTAGAGATTAAAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatcttctttttgaaattttctactaattataacttatgttattgaaatatcagGATTTAGATTTAGAGATTAAAAAGTCGCGTGCCACATGGAAATTTGTCGTGGGACATCACGGGATCAAAACCGCAGGTAATCACGGTGTGACTCAAGAGC
              aaattttctactaatt  TA-rich tract