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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataccttgaaatcttgatcttttttagatatcttatttgcttagaaaaccttaagaatctgctgaaaatttctggaatttgcagGATAACGTACGGAATCAGCTGATCCAATTCGAGCTGCTGCTAACTACTGCCACATTCGTTGTAGCCATCTTCGGGGTTGTAGCCGGGATCTTTGGGATGA

Basic information

species Arabidopsis thaliana
transcript AT1G80900.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G80900.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os04g42280.1 (Oryza sativa), 3'ss of exon 4
----------gtataccttgaaatcttgatcttttttagatatctt--atttgcttagaaaaccttaagaatctgctga--aaatttctggaatttgcagGATAACGTACGGAATCAGCTGATCCAATTCGAGCTGCTGCTAACTACTGCCACATTCGTTGTAGCCATCTTCGGGGTTGTAGCCGGGATCTTTGGGATGA
           | |   |       || | | | ||| |  |   |  || ||   |  |||   |    |  || | |  | |  | | |   || ||||| ||||| || || || ||||||||||| || |||||||| || || || |||||||| || ||||||||||| |||||  | ||  | ||||| ||||
gaaatgaaagttgtttttcatttcttttagcctgtttggtcactctctatctggacaagaaaatatgctcacatgatcatcacaaatgttgttcttacagGACAACGTCCGAAACCAACTGATCCAATTTGAACTGCTGCTGACCACGGCTACATTCGTGGTGGCCATCTTCGGAGTTGTCTCGGGAGTTTTTGGCATGA

upper sequence: AT1G80900.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G064467_T01 (Zea mays), 3'ss of exon 4
------gtatacct---tgaaatcttga---tcttttttagatatcttatttgcttagaaaaccttaag--aatctgctgaaaatttctggaatttgcagGATAACGTACGGAATCAGCTGATCCAATTCGAGCTGCTGCTAACTACTGCCACATTCGTTGTAGCCATCTTCGGGGTTGTAGCCGGGATCTTTGGGATGA
      |  ||  |   ||| | ||||     ||    |      |  | | | ||  || |    ||   ||  |||| | |  | ||||   |||||||||||||| ||||| ||||||||||||||||||||||| || || || ||||| ||||| || |||||||||||||| ||  | ||| | || || ||||
tctctggcctatttgtgtgacaacttgtgcccctgccctgccccccccagtcgtttgtaacagaaaaaacaaagatgctcacagatgctggctgttgcagGATAACGTCCGGAACCAGCTGATCCAATTCGAGCTGCTCCTGACCACCGCCACGTTCGTGGTGGCCATCTTCGGGGTGGTCTCGGGGGTTTTCGGCATGA

upper sequence: AT1G80900.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G170326_T01 (Zea mays), 3'ss of exon 5
------------------------gtataccttgaa-atcttgatcttttttagatatcttatttgcttagaaaaccttaagaatctgctgaaaatttctggaatttgcagGATAACGTACGGAATCAGCTGATCCAATTCGAGCTGCTGCTAACTACTGCCACATTCGTTGTAGCCATCTTCGGGGTTGTAGCCGGGATCTTTGGGATGA
                        |  ||  | | | ||    |||   ||||   || |    | ||  |     ||     || ||     | || |     ||   |||| ||||| ||||| ||||||||||| || ||| |||| ||||| ||||| ||||| ||||| ||||| || || || || || ||||| ||||||||||
gtacgtcgacatattttatactctgcttatttgggatatgcatatcaggtttatgcatttcccatact--gctggtctgtgttatttgacttgagttccatatgttcctagGACAACGTGCGGAACCAGCTGATCCAGTTTGAGTTGCTCCTAACGACTGCAACATTTGTTGTGGCCATTTTTGGAGTGGTTGCTGGGATATTTGGGATGA

upper sequence: AT1G80900.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv09s0018g00600.t01 (Vitis vinifera), 3'ss of exon 4
------------gtat-accttgaaat---cttgatctt---ttttagatatcttatttgcttagaaaaccttaagaatctgctgaaaatttctggaatttgcagGATAACGTACGGAATCAGCTGATCCAATTCGAGCTGCTGCTAACTACTGCCACATTCGTTGTAGCCATCTTCGGGGTTGTAGCCGGGATCTTTGGGATGA
             ||| || ||| ||    | || || |   ||| | ||   ||  |   ||||| |  | | |||      ||  | |||       |  |||||||| || || || |||||||||||||| ||||| || || || || || || || ||||| |||||||| ||||||||||| || || ||||| ||||
tgagtgtccattttatcacattggaacagccatggtcatgattttcatattgtttgatcttttagagagacattagacgtatttgttatttt-----gctcacagGATAATGTCCGAAACCAGCTGATCCAATTTGAGCTACTACTCACAACAGCAACTTTTGTTGTTGCCATCTTTGGGGTTGTAGCAGGCATATTTGGTATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttatttgcttagaaaaccttaagaatctgctgaaaatttctggaatttgcagGATAACGTACGGAATCAGCTGATCCAATTCGAGCTGCTGCTAACTACTGCCACATTCGTTGTAGCCATCTTCGGGGTTGTAGCCGGGATCTTTGGGATGA
                                 tgaaaattt  TA-rich tract