1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcaagtttttccccttgttattttttttttcccttttgatcattacggaattatggttgcagcttttgatcctgatagttttttcttctatgcgcatttgttgatctctacagAAGCCAATAAATATTTTGTGGAGTTCATATCTAAAGCATACCAGGCTTTGACTGATTCAGTATCCCGTGAAAACTTTGAGAAGTATGGTCATCCAGATGG
species | Arabidopsis thaliana |
transcript | AT1G79940.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATATAGAAGGCTGTCGATTCAATACCATCCTGATAAAAATCCAGATCCAG AAGCCAATAAATATTTTGTGGAGTTCATATCTAAAGCATACCAGGCTTTGAEST: gi|116473043|gb|EG515635.1|EG515635
genomic: ATATAGAAGGCTGTCGATTCAATACCATCCTGATAAAAATCCAGATCCAGgtcaagtttt ... atctctacagAAGCCAATAAATATTTTGTGGAGTTCATATCTAAAGCATACCAGGCTTTGA
EST: ATATAGAAGGCTGTCGATTCAATACCATCCTGATAAAAATCCAGATCCAG AAGCCAATAAATATTTTGTGGAGTTCATATCTAAAGCATACCAGGCTTTGAEST: gi|164216306|gb|ES162835.1|ES162835
genomic: ATATAGAAGGCTGTCGATTCAATACCATCCTGATAAAAATCCAGATCCAGgtcaagtttt ... atctctacagAAGCCAATAAATATTTTGTGGAGTTCATATCTAAAGCATACCAGGCTTTGA
EST: CCATCCTGATAAAAATCCAGATCCAG AAGCCAATAAATATTTTGTGGAGTTCATATCTAAAGCATACCAGGCTTTGA
genomic: CCATCCTGATAAAAATCCAGATCCAGgtcaagtttt ... atctctacagAAGCCAATAAATATTTTGTGGAGTTCATATCTAAAGCATACCAGGCTTTGA
gcagcttttgatcctgatagttttttcttctatgcgcatttgttgatctctacagAAGCCAATAAATATTTTGTGGAGTTCATATCTAAAGCATACCAGGCTTTGACTGATTCAGTATCCCGTGAAAACTTTGAGAAGTATGGTCATCCAGATGG
tctctac CT-rich tract
atagtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaagtttttccccttgttattttttttttcccttttgatcattacggaattatggttgcagcttttgatcctgatagttttttcttctatgcgcatttgttgatctctacagAAGCCAATAAATATTTTGTGGAGTTCATATCTAAAGCATACCAGGCTTTGACTGATTCAGTATCCCGTGAAAACTTTGAGAAGTATGGTCATCCAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG