1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaattttattaatcttctatgtaccttttttcctcatttgatttgctaattattctcttcattctccccctttaattatgttggtaattagctcttcttattttttttgtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAGGAAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTAC
species | Arabidopsis thaliana |
transcript | AT1G79150.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116393421|gb|EG436013.1|EG436013
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: TAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116393370|gb|EG435962.1|EG435962
genomic: TAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116393397|gb|EG435989.1|EG435989
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116393384|gb|EG435976.1|EG435976
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116393385|gb|EG435977.1|EG435977
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116393389|gb|EG435981.1|EG435981
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116381024|gb|EG423616.1|EG423616
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATTTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116393383|gb|EG435975.1|EG435975
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116393380|gb|EG435972.1|EG435972
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116393394|gb|EG435986.1|EG435986
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116393411|gb|EG436003.1|EG436003
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116393373|gb|EG435965.1|EG435965
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116393396|gb|EG435988.1|EG435988
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116381026|gb|EG423618.1|EG423618
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116393392|gb|EG435984.1|EG435984
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116393391|gb|EG435983.1|EG435983
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116393388|gb|EG435980.1|EG435980
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAEST: gi|116393379|gb|EG435971.1|EG435971
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAEST: gi|116393410|gb|EG436002.1|EG436002
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGA
EST: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGG CTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
genomic: AAACTTGCCTTGTTATCTCTGTTGGCCGTATTTAAAGATATTATTCCTGGgtaattttat ... gtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAA
ctccccctttaattatgttggtaattagctcttcttattttttttgtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAGGAAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTAC
ctttaat putative branch site (score: 4)
ctcttcttattttttt putative PPT
tcttcttatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttattaatcttctatgtaccttttttcctcatttgatttgctaattattctcttcattctccccctttaattatgttggtaattagctcttcttattttttttgtggtgccagCTATCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAGGAAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA