1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gttcagttggatttataatcttgctagacatgattttttttacttttatgattcgttttatgtggcttcttacgattctttggtttcatttctttaaatgtcacagAGGCCTTTGAAGACTATTGCAAGAATATCCGGTGATGTGTACATTCCTCGGGGTGTGTCTGTTCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCCAGC
species | Arabidopsis thaliana |
transcript | AT1G78900.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATTGGGAAATATCTTTGATGGAATTCAG AGGCCTTTGAAGACTATTGCAAGAATATCCGGTGATGTGTACATTCCTCGGEST: gi|116482299|gb|EG524891.1|EG524891
genomic: TATTGGGAAATATCTTTGATGGAATTCAGgttcagttgg ... aatgtcacagAGGCCTTTGAAGACTATTGCAAGAATATCCGGTGATGTGTACATTCCTCGG
EST: CTGTGGAGCTCGGGCCAGGAATATTGGGAAATATCTTTGATGGAATTCAG AGGCCTTTGAAGACTATTGCAAGAATATCCGGTGATGTGTACATTCCTCGGEST: gi|116482298|gb|EG524890.1|EG524890
genomic: CTGTGGAGCTCGGGCCAGGAATATTGGGAAATATCTTTGATGGAATTCAGgttcagttgg ... aatgtcacagAGGCCTTTGAAGACTATTGCAAGAATATCCGGTGATGTGTACATTCCTCGG
EST: CTGTGGAGCTCGGGCCAGGAATATTGGGAAATATCTTTGATGGAATTCAG AGGCCTTTGAAGACTATTGCAAGAATATCCGGTGATGTGTACATTCCTCGGEST: gi|164058864|gb|ES179920.1|ES179920
genomic: CTGTGGAGCTCGGGCCAGGAATATTGGGAAATATCTTTGATGGAATTCAGgttcagttgg ... aatgtcacagAGGCCTTTGAAGACTATTGCAAGAATATCCGGTGATGTGTACATTCCTCGG
EST: CTGTGGAGCTCGGGCCAGGAATATTGGGAAATATCTTTGATGGAATTCAG AGGCCTTTGAAGACTATTGCAAGAATATCCGGTGATGTGTACATTCCTCGG
genomic: CTGTGGAGCTCGGGCCAGGAATATTGGGAAATATCTTTGATGGAATTCAGgttcagttgg ... aatgtcacagAGGCCTTTGAAGACTATTGCAAGAATATCCGGTGATGTGTACATTCCTCGG
ttcgttttatgtggcttcttacgattctttggtttcatttctttaaatgtcacagAGGCCTTTGAAGACTATTGCAAGAATATCCGGTGATGTGTACATTCCTCGGGGTGTGTCTGTTCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCCAGC
ttcttac putative branch site (score: 2)
tttcatttctttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcagttggatttataatcttgctagacatgattttttttacttttatgattcgttttatgtggcttcttacgattctttggtttcatttctttaaatgtcacagAGGCCTTTGAAGACTATTGCAAGAATATCCGGTGATGTGTACATTCCTCGGGGTGTGTCTGTTCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC