1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtaaattctcaagttctctatgattcagatgactcaaacgtaaacacaaaatctttactttttatctctcatttttgcagTTCTGCATTCTTCTCTCCTGTGCATTAGCCGTTTTCTGTAACATAAGCCAATATCTCTGCATCGGAAGATTCTCAGCGACATCTTTCCAAGTTCTAGGCC
species | Arabidopsis thaliana |
transcript | AT1G76670.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTATGGTGCCATC TTCTGCATTCTTCTCTCCTGTGCATTAGCCGTTTTCTGTAACATAAGCCAAEST: gi|86085207|gb|DR380966.1|DR380966
genomic: CTTATGGTGCCATCgtaagtaaat ... atttttgcagTTCTGCATTCTTCTCTCCTGTGCATTAGCCGTTTTCTGTAACATAAGCCAA
EST: TGTTGAGCGGCAAATTCATATCTACTTACCAGATGACTTATGGTGCCATC TTCTGCATTCTTCTCTCCTGTGCATTAGCCGTTTTCTGT-A-A-AAGCCAAEST: gi|301503208|gb|HO208748.1|HO208748
genomic: TGTTGAGCGGCAAATTCATATCTACTTACCAGATGACTTATGGTGCCATCgtaagtaaat ... atttttgcagTTCTGCATTCTTCTCTCCTGTGCATTAGCCGTTTTCTGTAACATAAGCCAA
EST: TGTTGAGCGGCAAATTCATATCTACTTACCAGATGACTTATGGTGCCATC TTCTGCATTCTTCTCTCCTGTGCATTAGCCGTTTTCTGTAACATAAGCCAAEST: gi|125151768|gb|EL183751.1|EL183751
genomic: TGTTGAGCGGCAAATTCATATCTACTTACCAGATGACTTATGGTGCCATCgtaagtaaat ... atttttgcagTTCTGCATTCTTCTCTCCTGTGCATTAGCCGTTTTCTGTAACATAAGCCAA
EST: TGTTGAGCGGCAAATTCATATCTACTTACCAGATGACTTATGGTGCCATC CTCTGCATTCTTCTCTCCTGTGCATTAGCCGTTTTCTGTAA
genomic: TGTTGAGCGGCAAATTCATATCTACTTACCAGATGACTTATGGTGCCATCgtaagtaaat ... atttttgcagTTCTGCATTCTTCTCTCCTGTGCATTAGCCGTTTTCTGTAA
cagatgactcaaacgtaaacacaaaatctttactttttatctctcatttttgcagTTCTGCATTCTTCTCTCCTGTGCATTAGCCGTTTTCTGTAACATAAGCCAATATCTCTGCATCGGAAGATTCTCAGCGACATCTTTCCAAGTTCTAGGCC
tctttactttttatct CT-rich tract
aaaatctttacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaattctcaagttctctatgattcagatgactcaaacgtaaacacaaaatctttactttttatctctcatttttgcagTTCTGCATTCTTCTCTCCTGTGCATTAGCCGTTTTCTGTAACATAAGCCAATATCTCTGCATCGGAAGATTCTCAGCGACATCTTTCCAAGTTCTAGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA