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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcatgctagtctttgctatcttttattttttagcccagattaatcacccttgctgtcatgcctgctgtttggagttgcttcaaatatggaaaaaacatgaaacgatgtctcctactcctactggatgttttgagtttttttttacagtaaaattttgcttatgtttttttctccaaccagGTTTATCCTATGTACAAGGCGTTTATTGAACCTGATCTGAAGACAGCTCAGATTAAGATCCTTAATAAGTTCAACCCATTCAGTGGCTTTCAGAACCCAA

Basic information

species Arabidopsis thaliana
transcript AT1G73980.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73980.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G147430_T02 (Zea mays), 3'ss of exon 4
gttttcatgctagtctttgctatcttttattttttagcccagattaatcacccttgctgtcatgcctgctgtttggagttgct---tcaaatatggaaaaaacatgaaacgatgtctcctactcctactggatgttttgagtttttttttacagtaa--aattttgcttat--gtttttttctccaaccagGTTTATCCTATGTACAAGGCGTTTATTGAACCTGATCTGAAGACAGCTCAGATTAAGATCCTTAATAAGTTCAACCCATTCAGTGGCTTTCAGAACCCAA
                                                                   |  | ||| | || |    |    |||  |    |   | || | |||   | | |  ||   |      ||| ||   | |||| ||||    | | | |||      | |  |      ||||||||||| ||||||||||| || || ||||| ||| || |||| || || ||||||||| | || ||||||||||||||    || || || || || |
-------------------------------------------------------------------gtaggttgaattttccaacttggctatacattttatgagcaatgttgttgtccattgttaacag------tgaattacctcttactgtaattggtgtggtttaatgaaatatgacatttttcagGTTTATCCAATGTACAAGGCTTTCATCGAACCAGATTTGGAGACCGCACATATTAAGATCATCAACAAGTTCAACCCATTTTCAGGGTTCCAAAATCCTA

upper sequence: AT1G73980.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv17s0000g04650.t01 (Vitis vinifera), 3'ss of exon 3
gttttcatgctagtctttgctatcttttattttttagcccagattaatcacccttgctgtcatgcctgctgtttggagttgcttcaaatatggaaaaaacatgaaacgatgtctcctactcctactggatgttttgagtttttttttacagtaaaattttgcttatgtttttttctccaaccagGTTTATCCTATGTACAAGGCGTTTATTGAACCTGATCTGAAGACAGCTCAGATTAAGATCCTTAATAAGTTCAACCCATTCAGTGGCTTTCAGAACCCAA
                                                      || | |||    | || | |      | ||    ||   ||  ||| ||  | | |  | | ||     | |     | |  ||  ||| ||         | ||  | |  | ||| || | ||  ||||| ||||||||||||||||| |||||||| || |||||  | ||||| || || || ||| | || || ||||| ||||||| ||| ||||||||||| |
-----------------------------------------------------gtgttttcacttatactatgttagaaagttttctttacttaatgaac-tgttatggtagccctta-----attattcatataaagcatttatt-------gtacttctcatcagctttcttttaca--cagGTATATCCTATGTACAAGGCTTTTATTGAGCCAGATCTACAAACAGCACATATAAAAATCATCAACAAATTCAATCCATTCACTGGATTTCAGAACCCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttgagtttttttttacagtaaaattttgcttatgtttttttctccaaccagGTTTATCCTATGTACAAGGCGTTTATTGAACCTGATCTGAAGACAGCTCAGATTAAGATCCTTAATAAGTTCAACCCATTCAGTGGCTTTCAGAACCCAA
                           ttttgcttatgttttt  CT-rich tract
         tttttttttacagtaa  TA-rich tract