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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagctgagacatcctcatcatcatgttctgtttcacaattggttgcagcatttcttataaaaatattgtcttcttgttgcagGTCAAGTGGACAGAACTCTTTCCCTCTATCATTGCAGCTTCTAAAACACTTGCAGTGATTTCTTCAGGAATGGGAGGTACCCATGAGGGTGCATTGCATT

Basic information

species Arabidopsis thaliana
transcript AT1G73360.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125050873|gb|EL123142.1|EL123142
EST:     GTATTGTCTTCATGAATGCTATGGCACTTGTCGACATGTTCATGGATTGT                         GTCAAGTGGACAGAACT
genomic: GTATTGTCTTCATGAATGCTATGGCACTTGTCGACATGTTCATGGATTGTgtaagtagct ... cttgttgcagGTCAAGTGGACAGAACT
EST: gi|124926084|gb|EL003981.1|EL003981
EST:     TATTGTTCTTCATGAATGCTATGGCACTTGTCGACATGTTCATGGATTGT                         GTCAAGTGGACAGAACT
genomic: TATTG-TCTTCATGAATGCTATGGCACTTGTCGACATGTTCATGGATTGTgtaagtagct ... cttgttgcagGTCAAGTGGACAGAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtttcacaattggttgcagcatttcttataaaaatattgtcttcttgttgcagGTCAAGTGGACAGAACTCTTTCCCTCTATCATTGCAGCTTCTAAAACACTTGCAGTGATTTCTTCAGGAATGGGAGGTACCCATGAGGGTGCATTGCATT
                                      ttgtcttctt  CT-rich tract
                      atttcttataaaaata  TA-rich tract