1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gaaagtatgaagtttcttgcttctcataccatttacctctcttcatcatgtttttttctgcaattgggtggtgaccgttttcaccttatgtctcctttagGTGTTTTCTCTGGGAACCTCTCTACGGATATGAGGGAAGGTTCAAAATGGAATATCAATCGGAGTGGTTTCTGTGGAATGCGGTCAAAGAAG
species | Arabidopsis thaliana |
transcript | AT1G72420.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCGGCTTCGTTGGAAATTAAAGATGGAGGAAATCGATCAGATTGCAATG GTGTTTTCTCTGGGAACCTCTCTACGGATATGAGGGAAGGTTCAAAATGGAEST: gi|86065274|gb|DR361031.1|DR361031
genomic: TTCGGCTTCGTTGGAAATTAAAGATGGAGGAAATCGATCAGATTGCAATGgttagtatat ... tctcctttagGTGTTTTCTCTGGGAACCTCTCTACGGATATGAGGGAAGGTTCAAAATGGA
EST: TTCGGCTTCGTTGGAAATTAAAGATGGAGGAAATCTATCAGATTGCAATG GTGTTTTCTCTGGGAACCTCTCTACGGATATGAGGGAAGGTTCAAAATGGA
genomic: TTCGGCTTCGTTGGAAATTAAAGATGGAGGAAATCGATCAGATTGCAATGgttagtatat ... tctcctttagGTGTTTTCTCTGGGAACCTCTCTACGGATATGAGGGAAGGTTCAAAATGGA
tcatgtttttttctgcaattgggtggtgaccgttttcaccttatgtctcctttagGTGTTTTCTCTGGGAACCTCTCTACGGATATGAGGGAAGGTTCAAAATGGAATATCAATCGGAGTGGTTTCTGTGGAATGCGGTCAAAGAAG
ttttcaccttatgtct CT-rich tract
tttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagtatgaagtttcttgcttctcataccatttacctctcttcatcatgtttttttctgcaattgggtggtgaccgttttcaccttatgtctcctttagGTGTTTTCTCTGGGAACCTCTCTACGGATATGAGGGAAGGTTCAAAATGGAATATCAATCGGAGTGGTTTCTGTGGAATGCGGTCAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - ttgcttc
- - - - - - - - - - - - catacca
- - - - - - - - - - - - - - - - - -cctctct