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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatacatatgctttaccggctcagttacagtctttgtttaatcttaggttttgttccaatttttgactctttgctgaaaattttacatgcaagaatagCCGGCTTAACAACAACAGTCTCACTGGGTCAATTCCTATGTCACTGACCAATATTACTACCCTTCAAGTGTT

Basic information

species Arabidopsis thaliana
transcript AT1G71830.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71830.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os04g38480.1 (Oryza sativa), 3'ss of exon 4
gtgagtataca--------tatgctttaccggctcagttacagtctttgtttaatcttagg-----ttttgttccaatttt-------tgactctttgctgaaaattttacatgcaagaatagCCGGCTTAACAACAACAGTCTCACTGGGTCAATTCCTATGTCACTGACCAATATTACTACCCTTCAAGTGTT
|| ||| |||         | |   |||       | ||| |   | ||| ||   ||        |  ||||  |||  |       | | |||||  |   |  | | | || ||| |||| || |||||||||||||||||  |||| |||||||| |  ||  |||||||||| ||||| ||||||||  |
gtaagtgtactccactttttttttattatgaatagaattataaattgtgtatatcattgaaggccttcctgtttgaatgatcataacataattctttatttgcatgtcttcttgtaaggatagTCGTCTTAACAACAACAGTCTTTCTGGTTCAATTCCAAAATCCTTGACCAATATCACTACTCTTCAAGTTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaggttttgttccaatttttgactctttgctgaaaattttacatgcaagaatagCCGGCTTAACAACAACAGTCTCACTGGGTCAATTCCTATGTCACTGACCAATATTACTACCCTTCAAGTGTT
                 ttttgac  putative branch site (score: 3)
                               tgaaaattttacat  TA-rich tract