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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctacttcacgatatagaacacaaattgctaaacaacaacctcttctaatcatatgtttaccaattacagGAGGATTAATGTACAAGCTACCTCAAAGCAATCTTCAGTACGTAACCTCCATAACATTCTTGCTCACAACTTACGCCAAATACATGAAAGCCACAAAACA

Basic information

species Arabidopsis thaliana
transcript AT1G71380.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71380.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA06G48140.1 (Glycine max), 3'ss of exon 4
----------------------------------------------------------------------------------------------------------gtaacctacttcacgatatagaacacaaattgctaaacaacaacctcttctaatcatatgtttaccaatta-cagGAGGATTAATGTACAAGCTACCTCAAAGCAATCTTCAGTACGTAACCTCCATAACATTCTTGCTCACAACTTACGCCAAATACATGAAAGCCACAAAACA
                                                                                                            ||  |||||     |     | |   |||  ||||   ||     |     |  ||  ||||   ||   |||| ||| | ||||||||||| ||| ||||||| || ||||| || || || |||||||||||||||||||| ||  | || || |||  ||| | ||| ||
gtaaaggcaacatcactactgaattttcaaaacacagctgggtcaatcaaagtcatgcattactgatatacaagaaaacatgacaaatatttgcatccacgatcaataaatttactttgaagtgctttaaaagtatta-taaaaggcactaattgtatgtggtacttttatttatgggcagGGGGACTCATGTACAAGCTTCCTGAAAGCAACCTCCAGTATGTGACATCTATAACATTCTTGCTCACAACCTATTCAAAGTATATGTCAGCTAAAAAGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaacacaaattgctaaacaacaacctcttctaatcatatgtttaccaattacagGAGGATTAATGTACAAGCTACCTCAAAGCAATCTTCAGTACGTAACCTCCATAACATTCTTGCTCACAACTTACGCCAAATACATGAAAGCCACAAAACA
                            ttctaat  putative branch site (score: 2)
                               taatcatatgttta  TA-rich tract