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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcattaccaagccatttcactcttgttcttgtctgagatcaaataactaacaccaaagtggttttgataatttatcagAAGAGACACTCTGGAGTTGGCGCCGCCGTTGAATACGCAGTTGTACATCTCAAG

Basic information

species Arabidopsis thaliana
transcript AT1G70410.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125164739|gb|EL191346.1|EL191346
EST:     AGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAG                         AAGAGACACTCTGGAGTTGGCG
genomic: AGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAGgttcattacc ... aatttatcagAAGAGACACTCTGGAGTTGGCG
EST: gi|124816695|gb|EH901561.1|EH901561
EST:     AGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAG                         AAGAGACACTCTGGAGTTGGCGCCGCCGTTG
genomic: AGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAGgttcattacc ... aatttatcagAAGAGACACTCTGGAGTTGGCGCCGCCGTTG
EST: gi|125015060|gb|EL087329.1|EL087329
EST:     CAATATGGTTCCACCTTTTGACCAG                         AAGAGACACTCTGGAGTTGGCGCCGCCGTTGAATACGCAGTT
genomic: CAATATGGTTCCACCTTTTGACCAGgttcattacc ... aatttatcagAAGAGACACTCTGGAGTTGGCGCCGCCGTTGAATACGCAGTT
EST: gi|124858357|gb|EH942794.1|EH942794
EST:     AGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAG                         AAGAGACCACTCTGGAGTTGGCGCCGCCGTTGAATACGCAGTTGTA
genomic: AGGCTTTTGTTGTCAGAAACATAGCCAATATGGTTCCACCTTTTGACCAGgttcattacc ... aatttatcagAAGAGAC-ACTCTGGAGTTGGCGCCGCCGTTGAATACGCAGTTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcttgtctgagatcaaataactaacaccaaagtggttttgataatttatcagAAGAGACACTCTGGAGTTGGCGCCGCCGTTGAATACGCAGTTGTACATCTCAAG
                                      ttttgataatttatca  TA-rich tract