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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtttttttgttaaacttgttatcttcttcttatgtgtgagtgagagtttaatgagtgtgttgtgtttaattctcagTCTCTTGGGCCTGAAGCTTGTTTCTCCACTTCCATGAGATCAGTTGGTGTCATACCATCAACAGACAGCACGGTTATTGAGTTAACTGGATGTGACAGAC

Basic information

species Arabidopsis thaliana
transcript AT1G69040.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152038350|gb|BP814558.2|BP814558
EST:     AAGATGGTAACAAAGTCACTGATGAAGTTGTTCTAGACTATATCCAAAAG                         TCTCTTGGGCCTGAAGCTTGTTTCTCCACTTCCATGAGATCAGTTGGTGTC
genomic: AAGATGGTAACAAAGTCACTGATGAAGTTGTTCTAGACTATATCCAAAAGgtgagtgttt ... taattctcagTCTCTTGGGCCTGAAGCTTGTTTCTCCACTTCCATGAGATCAGTTGGTGTC
EST: gi|152033851|gb|BP817681.2|BP817681
EST:     AAGATGGTAACAAAGTCACTGATGAAGTTGTTCTAGACTATATCCAAAAG                         TCTCTTGGGCCTGAAGCTTGTTTCTCCACTTCCATGAGATCAGTTGGTGTC
genomic: AAGATGGTAACAAAGTCACTGATGAAGTTGTTCTAGACTATATCCAAAAGgtgagtgttt ... taattctcagTCTCTTGGGCCTGAAGCTTGTTTCTCCACTTCCATGAGATCAGTTGGTGTC
EST: gi|152034011|gb|AU239517.2|AU239517
EST:     AAGATGGTAACAAAGTCACTGATGAAGTTGTTCTAGACTATATCCAAAAG                         TCTCTTGGGCCTGAAGCTTGTTTCTCCACTTCCATGAGATCAGTTGGTGTC
genomic: AAGATGGTAACAAAGTCACTGATGAAGTTGTTCTAGACTATATCCAAAAGgtgagtgttt ... taattctcagTCTCTTGGGCCTGAAGCTTGTTTCTCCACTTCCATGAGATCAGTTGGTGTC
EST: gi|152034315|gb|BP825151.2|BP825151
EST:     AGATGGTAACAAAGTCACTGATGAAGTTGTTCTAGACCTATATCCAAAAG                         TCTCTTGGGCCTGAAGCTTGTTTCTCCACTTCCATGAGATCAGTTGGTGTC
genomic: AGATGGTAACAAAGTCACTGATGAAGTTGTTCTAGAC-TATATCCAAAAGgtgagtgttt ... taattctcagTCTCTTGGGCCTGAAGCTTGTTTCTCCACTTCCATGAGATCAGTTGGTGTC
EST: gi|152033946|gb|BP820708.2|BP820708
EST:     AAGATGGTAACAAAGTCACTGATGAAGTTGTTCTAGACTATATCCAAAAG                         TCTCTTGGGCCTGAAGCTTGTTTCTCCACTTCCATGAGATCAGTTGGTGTC
genomic: AAGATGGTAACAAAGTCACTGATGAAGTTGTTCTAGACTATATCCAAAAGgtgagtgttt ... taattctcagTCTCTTGGGCCTGAAGCTTGTTTCTCCACTTCCATGAGATCAGTTGGTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcttcttatgtgtgagtgagagtttaatgagtgtgttgtgtttaattctcagTCTCTTGGGCCTGAAGCTTGTTTCTCCACTTCCATGAGATCAGTTGGTGTCATACCATCAACAGACAGCACGGTTATTGAGTTAACTGGATGTGACAGAC
                                          gtttaat  putative branch site (score: 4)
                                                ttctc  CT-rich tract
                                         tgtttaatt  TA-rich tract