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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaacattagtcttgctattttagatttttttcaaggtttcagttaaatggtgacttgaacagtatttgatctctcattttttttgtagGTTTCTGACTTTGGCCTTGCAAGATTAGCTCTTGATTGTAACACTCATATCACCACACGGGTCATCGGAACATTTGG

Basic information

species Arabidopsis thaliana
transcript AT1G68690.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124787655|gb|EH877334.1|EH877334
EST:     GGGACATCAAGTCGTCTAACATTCTTTTAGAGGACAACTTTGATGCTCGG                         GTTTCTGACTTTGGCCTTGCAAGATTAGCT
genomic: GGGACATCAAGTCGTCTAACATTCTTTTAGAGGACAACTTTGATGCTCGGgtacaacatt ... ttttttgtagGTTTCTGACTTTGGCCTTGCAAGATTAGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggtttcagttaaatggtgacttgaacagtatttgatctctcattttttttgtagGTTTCTGACTTTGGCCTTGCAAGATTAGCTCTTGATTGTAACACTCATATCACCACACGGGTCATCGGAACATTTGG
                              atttgat  putative branch site (score: 5)
                                    tctctcattttttttg  CT-rich tract
                                        tcattttttttgta  TA-rich tract