Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttccaacaagagcagcaatacgaagattaccagtgggtattcagtttaaacaattatctacttagtttttgatgacctatttgttgcacgtctgtaacagAAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCCGGGGCATACTTAGGATCTGGGGGTCCCCCTCCAGTATATATGGGCGGGTCAC

Basic information

species Arabidopsis thaliana
transcript AT1G67325.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116475626|gb|EG518218.1|EG518218
EST:     CTTGCAATATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGA                         AAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCCGGG
genomic: CTTGCAATATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGAgtaagttatt ... tctgtaacagAAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCCGGG
EST: gi|164114272|gb|ES052848.1|ES052848
EST:     GACCTGCAGATCATAATGGA                         AAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCCGGG
genomic: GACCTGCAGATCATAATGGAgtaagttatt ... tctgtaacagAAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCCGGG
EST: gi|125081616|gb|EL142772.1|EL142772
EST:     TATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGA                         AAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCC
genomic: TATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGAgtaagttatt ... tctgtaacagAAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCC
EST: gi|116475625|gb|EG518217.1|EG518217
EST:     CTTGCAATATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGA                         AAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCCGGG
genomic: CTTGCAATATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGAgtaagttatt ... tctgtaacagAAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCCGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaacaattatctacttagtttttgatgacctatttgttgcacgtctgtaacagAAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCCGGGGCATACTTAGGATCTGGGGGTCCCCCTCCAGTATATATGGGCGGGTCAC
                     ttttgat  putative branch site (score: 4)
      aattatcta  TA-rich tract