1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaatgttcttggatatttttggtgtgaaggcagagttctgttaaaatgatggatattggaattaggattgagacctcttactatgtcttcatctttgcagGAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACAT
species | Arabidopsis thaliana |
transcript | AT1G65700.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTT-CCACAAAG GAAGGAGTACAACAACATGTGTTEST: gi|125072200|gb|EL136976.1|EL136976
genomic: CTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAGgttagcttct ... atctttgcagGAAGGAGTACAACAACATGTGTT
EST: CAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAG GAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACEST: gi|152038480|gb|AV824046.2|AV824046
genomic: CAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAGgttagcttct ... atctttgcagGAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAAC
EST: CTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAG GAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACEST: gi|164200742|gb|ES085655.1|ES085655
genomic: CTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAGgttagcttct ... atctttgcagGAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAAC
EST: GATGAATCTCATGAACGTGTGTTTTCCACAAAG GAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACEST: gi|125281075|gb|EL295160.1|EL295160
genomic: GATGAATCTCATGAACGTGTGTTTTCCACAAAGgttagcttct ... atctttgcagGAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAAC
EST: CTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAG GAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAG
genomic: CTACAAATATAATCCTTGATGAATCTCATGAACGTGTGTTTTCCACAAAGgttagcttct ... atctttgcagGAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAG
atgatggatattggaattaggattgagacctcttactatgtcttcatctttgcagGAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACAT
ctcttac putative branch site (score: 3)
tcttcatcttt putative PPT
ttactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgttcttggatatttttggtgtgaaggcagagttctgttaaaatgatggatattggaattaggattgagacctcttactatgtcttcatctttgcagGAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACAT
- - - - - - - -tttttgg
- - - - - - - - - - - - - - - - - - - - - aaaatga