1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgctctctgtcttgatatctctcactgtttactctccatattcaaggagtagtaccgataataacttctcgatttccaaattggaacagTTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGCATATCCTTCTCTGGATGCATTCAGTTAATGGGTTTCTGCACATTTGAAGCGTGTGTAGGAATCT
species | Arabidopsis thaliana |
transcript | AT1G64650.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCTTCCTGTTGTAACAAGC TTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGCATATCCTTCTCTGGAEST: gi|164151049|gb|EL979426.1|EL979426
genomic: TGCTTCCTGTTGTAACAAGCgtatgctctc ... attggaacagTTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGCATATCCTTCTCTGGA
EST: TCGTATTTGTGATATCTTCTGCTGCTCTAATGCTTCCTGTTGTAACAAGC TTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGCATATEST: gi|124753612|gb|EH843742.1|EH843742
genomic: TCGTATTTGTGATATCTTCTGCTGCTCTAATGCTTCCTGTTGTAACAAGCgtatgctctc ... attggaacagTTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGCATAT
EST: TCGTATTTGTGATATCTTCTGCTGCTCTAATGCTTCCTGTTGTAACAAGC TTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGCEST: gi|164091798|gb|ES072170.1|ES072170
genomic: TCGTATTTGTGATATCTTCTGCTGCTCTAATGCTTCCTGTTGTAACAAGCgtatgctctc ... attggaacagTTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGC
EST: CTGCTGCTCTAATGCTTCCTGTTGTAACAAGC TTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGCATATCCTTCTCTGGAEST: gi|86062547|gb|DR358304.1|DR358304
genomic: CTGCTGCTCTAATGCTTCCTGTTGTAACAAGCgtatgctctc ... attggaacagTTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGCATATCCTTCTCTGGA
EST: TCGTATTTGTGATATCTTCTGCTGCTCTAATGCTTCCTGTTGTAACAAGC TTCTTGGTGGCGCCCTCAGGTGTAAAAGEST: gi|124761493|gb|EH851623.1|EH851623
genomic: TCGTATTTGTGATATCTTCTGCTGCTCTAATGCTTCCTGTTGTAACAAGCgtatgctctc ... attggaacagTTCTTGGTGGCGCCCTCAGGTGTAAAAG
EST: CGTATTTGTGATATCTTCTGCTGCTCTAATGCTTCCTGTTGTAACAAGC TTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGCATATCCTTCTCTGG
genomic: CGTATTTGTGATATCTTCTGCTGCTCTAATGCTTCCTGTTGTAACAAGCgtatgctctc ... attggaacagTTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGCATATCCTTCTCTGG
tccatattcaaggagtagtaccgataataacttctcgatttccaaattggaacagTTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGCATATCCTTCTCTGGATGCATTCAGTTAATGGGTTTCTGCACATTTGAAGCGTGTGTAGGAATCT
taataac putative branch site (score: 1)
ataataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctctctgtcttgatatctctcactgtttactctccatattcaaggagtagtaccgataataacttctcgatttccaaattggaacagTTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGCATATCCTTCTCTGGATGCATTCAGTTAATGGGTTTCTGCACATTTGAAGCGTGTGTAGGAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC