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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattttgaattgagacttttatctcactctctttgaactgggaatcgaatagaaggaatcatcatcatttattttgttgttttagATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTAGCCTTACCAGAAGACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTC

Basic information

species Arabidopsis thaliana
transcript AT1G64350.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116480252|gb|EG522844.1|EG522844
EST:     GCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAG                         ATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTA
genomic: GCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAGgtatattttg ... gttgttttagATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTA
EST: gi|86079867|gb|DR375624.1|DR375624
EST:     ACTCTGACTCTCCACATCTTAACTCTTCCAAG                         ATTT-GGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTA
genomic: ACTCTGACTCTCCACATCTTAACTCTTCCAAGgtatattttg ... gttgttttagATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTA
EST: gi|86044889|gb|DR340644.1|DR340644
EST:     GCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAG                         ATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTA
genomic: GCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAGgtatattttg ... gttgttttagATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTA
EST: gi|86044893|gb|DR340648.1|DR340648
EST:     GCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAG                         ATTTGGGAGTTTGATGAAGCTCATAACAGATGGT
genomic: GCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAGgtatattttg ... gttgttttagATTTGGGAGTTTGATGAAGCTCATAACAGATGGT
EST: gi|125177844|gb|EL196668.1|EL196668
EST:     CTTAACTCTTCCAAG                         ATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTA
genomic: CTTAACTCTTCCAAGgtatattttg ... gttgttttagATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTA
EST: gi|86044891|gb|DR340646.1|DR340646
EST:     GCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAG                         ATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTA
genomic: GCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAGgtatattttg ... gttgttttagATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTA
EST: gi|116457542|gb|EG500134.1|EG500134
EST:     GCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAG                         ATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTA
genomic: GCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAGgtatattttg ... gttgttttagATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTA
EST: gi|86044879|gb|DR340634.1|DR340634
EST:     GCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAG                         AATTTGGGAGTTTGATGAAG
genomic: GCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAGgtatattttg ... gttgttttagA-TTTGGGAGTTTGATGAAG
EST: gi|116430790|gb|EG473382.1|EG473382
EST:     GCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAG                         ATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTA
genomic: GCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAGgtatattttg ... gttgttttagATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTA
EST: gi|116430791|gb|EG473383.1|EG473383
EST:     GCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAG                         ATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTA
genomic: GCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAGgtatattttg ... gttgttttagATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgaactgggaatcgaatagaaggaatcatcatcatttattttgttgttttagATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTAGCCTTACCAGAAGACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTC
                                         ttttgtt  CT-rich tract
                                 atcatttattttgttg  TA-rich tract