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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagaaccgtaacagctaaaacaaccaacgataaccaaagtttctaatctgtgaagagttgctgaaacttgtcaagatgcttcacgatcactaatctgttcttccttgtattactgtgcttctgcagGTTACCAGAGAGTCATTAATATCTCTGTGGTGAAATCATTAGAAGAGAAGTTAGCTTAGTCCATGAAACCAGATTTTCTTCCACCATGGTCCAATTCTCT

Basic information

species Arabidopsis thaliana
transcript AT1G63680.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124807143|gb|EH893580.1|EH893580
EST:     TTCCCATGGCG                         GTTACCAGAGAGTCATTAATATCTCTGTGGTGAAATCATTAGAAGAGAAGT
genomic: TTCCCATGGCGgtaagtagaa ... gcttctgcagGTTACCAGAGAGTCATTAATATCTCTGTGGTGAAATCATTAGAAGAGAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagatgcttcacgatcactaatctgttcttccttgtattactgtgcttctgcagGTTACCAGAGAGTCATTAATATCTCTGTGGTGAAATCATTAGAAGAGAAGTTAGCTTAGTCCATGAAACCAGATTTTCTTCCACCATGGTCCAATTCTCT
                cactaat  putative branch site (score: 2)
                                            tgcttct  putative PPT
                                 ttgtatta  TA-rich tract